Stxbp3-ps Pseudogene Detail

Summary

• Symbol
  Stxbp3-ps
• Name
  syntaxin-binding protein 3, pseudogene
• Synonyms
  Munc18c(L), Stxbp3b

• Feature Type
  pseudogene
• IDs
  MGI:3586869
  NCBI Gene: 619371
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:9535156-9536547 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 6.10 cM, cytoband B
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  29 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3586869	pseudogene	Chr19:9534970-9536612 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011469	pseudogene	Chr19:6873295-6874630 (-)
A/J	MGP_AJ_G0011472	pseudogene	Chr19:6257929-6259861 (-)
AKR/J	MGP_AKRJ_G0011434	pseudogene	Chr19:6632342-6633591 (-)
BALB/cJ	MGP_BALBcJ_G0011452	pseudogene	Chr19:6397143-6398570 (-)
C3H/HeJ	MGP_C3HHeJ_G0011336	pseudogene	Chr19:6521699-6524151 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011738	pseudogene	Chr19:7104205-7105648 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0011362	pseudogene	Chr19:6359572-6363223 (-)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0011364	pseudogene	Chr19:7108974-7113792 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011724	pseudogene	Chr19:6684712-6686068 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Stxbp3-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  11 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000071640 (Evidence)
• NCBI Gene
  619371

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000071640	Ensembl Gene Model | MGI Sequence Detail	1392	C57BL/6J
transcript	ENSMUST00000090527	Ensembl | MGI Sequence Detail	758	Not Applicable
polypeptide	Q45Z54	UniProt | EBI | MGI Sequence Detail	273	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR043154 Sec1-like, domain 1
  IPR027482 Sec1-like, domain 2
  IPR001619 Sec1-like protein
  IPR036045 Sec1-like superfamily

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 1
• Earliest
  J:100033 Schlaepfer IR, et al., Cloning and characterization of Munc18c(L), a novel murine Munc18c gene paralog. Biochem Biophys Res Commun. 2005 Sep 2;334(3):911-6
• Latest
  J:157637 Jewell JL, et al., Exocytosis mechanisms underlying insulin release and glucose uptake: conserved roles for Munc18c and syntaxin 4. Am J Physiol Regul Integr Comp Physiol. 2010 Mar;298(3):R517-31

TSS for Stxbp3-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr158102	Chr19:9536568-9536612 (-)	-43 bp