B020017C02Rik Pseudogene Detail

Summary

• Symbol
  B020017C02Rik
• Name
  RIKEN cDNA B020017C02 gene
• Synonyms
  Gm19849

• Feature Type
  pseudogene
• IDs
  MGI:3588285
  NCBI Gene: 100503708
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:54540302-54541384 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 25.57 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3588285	pseudogene	Chr3:54540302-54541989 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012153	pseudogene	Chr3:53323295-53324982 (-)
A/J	MGP_AJ_G0012147	pseudogene	Chr3:51686408-51688095 (-)
AKR/J	MGP_AKRJ_G0012110	pseudogene	Chr3:52746601-52748294 (-)
BALB/cJ	MGP_BALBcJ_G0012125	pseudogene	Chr3:51540399-51542095 (-)
C3H/HeJ	MGP_C3HHeJ_G0012000	pseudogene	Chr3:52957839-52959532 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012434	pseudogene	Chr3:55362367-55364054 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010857	pseudogene	Chr3:48213331-48215009 (-)
CAST/EiJ	MGP_CASTEiJ_G0011780	pseudogene	Chr3:53092556-53094231 (-)
CBA/J	MGP_CBAJ_G0011975	pseudogene	Chr3:57132821-57134514 (-)
DBA/2J	MGP_DBA2J_G0012031	pseudogene	Chr3:51247998-51249682 (-)
FVB/NJ	MGP_FVBNJ_G0012035	pseudogene	Chr3:50217583-50219267 (-)
LP/J	MGP_LPJ_G0012099	pseudogene	Chr3:54031607-54033294 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012039	pseudogene	Chr3:61235927-61237611 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012443	pseudogene	Chr3:52658663-52660350 (-)
PWK/PhJ	MGP_PWKPhJ_G0011622	pseudogene	Chr3:50916243-50917909 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011439	pseudogene	Chr3:52415289-52416955 (-)
WSB/EiJ	MGP_WSBEiJ_G0011811	pseudogene	Chr3:52791729-52793410 (-)

Homology

• Gene Tree
  B020017C02Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving B020017C02Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000104831 (Evidence)
• NCBI Gene
  100503708

Representative Sequences			Length	Strain/Species
genomic	100503708	NCBI Gene Model | MGI Sequence Detail	1083	C57BL/6J
transcript	AK139788	GenBank | ENA | DDBJ | MGI Sequence Detail	3026	C57BL/6J

Molecular
Reagents

• All nucleic 3

  cDNA 3

Other
Accession IDs

MGI:5012034

References

• Summaries
  All 11

  Diseases 1

  Phenotypes 2
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for B020017C02Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr33279	Chr3:54542047-54542050 (-)	-665 bp