9330162012Rik Gene Detail

Summary

• Symbol
  9330162012Rik
• Name
  cDNA RIKEN 9330162012 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3604449
  NCBI Gene: 493800
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr13:25121384-25123032 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 10.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  158 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3604449	lncRNA gene	Chr13:25121384-25125400 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015252	unclassified non-coding RNA gene	Chr13:22442138-22446154 (+)
A/J	MGP_AJ_G0015226	unclassified non-coding RNA gene	Chr13:22025307-22029324 (+)
AKR/J	MGP_AKRJ_G0015189	unclassified non-coding RNA gene	Chr13:22268403-22272419 (+)
BALB/cJ	MGP_BALBcJ_G0015188	unclassified non-coding RNA gene	Chr13:22003915-22007931 (+)
C3H/HeJ	MGP_C3HHeJ_G0015012	unclassified non-coding RNA gene	Chr13:22347636-22351652 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015645	unclassified non-coding RNA gene	Chr13:23239311-23243327 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013387	unclassified non-coding RNA gene	Chr13:20742823-20746897 (+)
CAST/EiJ	MGP_CASTEiJ_G0014565	unclassified non-coding RNA gene	Chr13:22068693-22072712 (+)
CBA/J	MGP_CBAJ_G0014991	unclassified non-coding RNA gene	Chr13:24127437-24131453 (+)
DBA/2J	MGP_DBA2J_G0015084	unclassified non-coding RNA gene	Chr13:21518294-21522310 (+)
FVB/NJ	MGP_FVBNJ_G0015095	unclassified non-coding RNA gene	Chr13:21165783-21169799 (+)
LP/J	MGP_LPJ_G0015165	unclassified non-coding RNA gene	Chr13:22735182-22739198 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015122	unclassified non-coding RNA gene	Chr13:24379236-24383252 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015684	unclassified non-coding RNA gene	Chr13:22121416-22125432 (+)
PWK/PhJ	MGP_PWKPhJ_G0014357	unclassified non-coding RNA gene	Chr13:21542364-21546380 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014144	unclassified non-coding RNA gene	Chr13:20952394-20956477 (+)
WSB/EiJ	MGP_WSBEiJ_G0014668	unclassified non-coding RNA gene	Chr13:22287706-22291716 (+)

Homology

• Gene Tree
  9330162012Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 9330162012Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000086448 (Evidence)
• NCBI Gene
  493800

Representative Sequences			Length	Strain/Species
genomic	493800	NCBI Gene Model | MGI Sequence Detail	1649	C57BL/6J
transcript	NR_102323	RefSeq | MGI Sequence Detail	1468	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 16

  Phenotypes 8
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:141688 Goldsworthy M, et al., Role of the transcription factor sox4 in insulin secretion and impaired glucose tolerance. Diabetes. 2008 Aug;57(8):2234-44

TSS for 9330162012Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr118979	Chr13:25121127-25121149 (+)	-246 bp
Tssr118980	Chr13:25121161-25121187 (+)	-210 bp
Tssr118981	Chr13:25121191-25121202 (+)	-187 bp