9030619P08Rik Pseudogene Detail

Summary

• Symbol
  9030619P08Rik
• Name
  RIKEN cDNA 9030619P08 gene

• Feature Type
  pseudogene
• IDs
  MGI:3612405
  NCBI Gene: 105892
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:75299815-75303285 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 34.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  274 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3612405	pseudogene	Chr15:75299455-75303678 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039801	pseudogene	Chr15:75367401-75371624 (-)
A/J	MGP_AJ_G0039801	pseudogene	Chr15:72708998-72713221 (-)
AKR/J	MGP_AKRJ_G0039728	pseudogene	Chr15:74584038-74588261 (-)
BALB/cJ	MGP_BALBcJ_G0039775	pseudogene	Chr15:72635463-72639686 (-)
C3H/HeJ	MGP_C3HHeJ_G0039430	pseudogene	Chr15:74662654-74666877 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040339	pseudogene	Chr15:78217910-78222133 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038543	pseudogene	Chr15:75488710-75492935 (-)
CBA/J	MGP_CBAJ_G0039400	pseudogene	Chr15:80713745-80717968 (-)
DBA/2J	MGP_DBA2J_G0039601	pseudogene	Chr15:72221304-72225527 (-)
FVB/NJ	MGP_FVBNJ_G0039557	pseudogene	Chr15:71229970-71234193 (-)
LP/J	MGP_LPJ_G0039634	pseudogene	Chr15:75439811-75444034 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039557	pseudogene	Chr15:86047252-86051475 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040441	pseudogene	Chr15:74917039-74921262 (-)
PWK/PhJ	MGP_PWKPhJ_G0038222	pseudogene	Chr15:72271520-72275888 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0037964	pseudogene	Chr15:74624983-74629220 (-)
WSB/EiJ	MGP_WSBEiJ_G0038776	pseudogene	Chr15:74948629-74952852 (-)

Homology

• Gene Tree
  9030619P08Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  23 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  3
• Radiation induced
  2
• Genomic Mutations
  5 involving 9030619P08Rik
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1
• UniProt
  1
• CCDS
  CCDS49639.1

• Ensembl
  ENSMUSG00000053168 (Evidence)
• NCBI Gene
  105892

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000053168	Ensembl Gene Model | MGI Sequence Detail	3471	C57BL/6J
transcript	ENSMUST00000190141	Ensembl | MGI Sequence Detail	435	Not Applicable
polypeptide	Q5M8M1	UniProt | EBI | MGI Sequence Detail	49	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR051445 Lymphocyte Antigen 6 Family Modulators

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 3

References

• Summaries
  All 34

  Diseases 1

  Phenotypes 23
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for 9030619P08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr134844	Chr15:75303594-75303623 (-)	-324 bp