Rps23rg1 MGI Mouse Gene Detail - MGI:3612471 - ribosomal protein S23, retrogene 1

Symbol

Rps23rg1
Name

ribosomal protein S23, retrogene 1
Synonyms

2610027C06Rik, C330021F23Rik

Feature Type

protein coding gene
IDs

MGI:3612471
NCBI Gene: 546049
Alliance

gene page
Transcription Start Sites

1 TSS

Sequence Map

Chr8:3617998-3634776 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 8, 1.92 cM
Mapping Data

2 experiments

SNPs within 2kb

506 from dbSNP Build 142
Strain Annotations

16

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3612471	protein coding gene	Chr8:3617990-3634939 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0033307	protein coding gene	Chr8:503948-518122 (+)
A/J	MGP_AJ_G0033290	protein coding gene	Chr8:480617-491198 (+)
AKR/J	MGP_AKRJ_G0033221	protein coding gene	Chr8:502764-513239 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0033004	protein coding gene	Chr8:512221-523056 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0033800	protein coding gene	Chr8:526803-570698 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0030773	protein coding gene	Chr8:430932-442347 (+)
CAST/EiJ	MGP_CASTEiJ_G0032327	protein coding gene	Chr8:514014-525602 (+)
CBA/J	MGP_CBAJ_G0032977	protein coding gene	Chr8:551958-565008 (+)
DBA/2J	MGP_DBA2J_G0033131	protein coding gene	Chr8:451411-462065 (+)
FVB/NJ	MGP_FVBNJ_G0033078	protein coding gene	Chr8:500741-511180 (+)
LP/J	MGP_LPJ_G0033223	protein coding gene	Chr8:493906-504363 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0033818	protein coding gene	Chr8:499603-510358 (+)
PWK/PhJ	MGP_PWKPhJ_G0032037	protein coding gene	Chr8:476332-487536 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0031881	protein coding gene	Chr8:492002-503975 (+)
WSB/EiJ	MGP_WSBEiJ_G0032440	protein coding gene	Chr8:497681-508406 (+)

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Gene Tree

Rps23rg1

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Phenotype Summary

11 phenotypes from 1 allele in 1 genetic background
7 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

185
Endonuclease-mediated

2
Gene trapped

183
Incidental Mutations

APF
Find Mice (IMSR)

7 strains or lines available

Mice homozygous for a null allele exhibit memory deficits and impaired postsynaptic structure and function.

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All GO Annotations

6
GO References

2

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

4

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

35
RefSeq

2
UniProt

2
CCDS

CCDS52468.1

Ensembl

ENSMUSG00000065952 (Evidence)
NCBI Gene

546049

			Length	Strain/Species	Flank
genomic	546049	NCBI Gene Model \| MGI Sequence Detail	16779	C57BL/6J	± kb
transcript	NM_001024728	RefSeq \| MGI Sequence Detail	1621	C57BL/6
polypeptide	NP_001019899	RefSeq \| MGI Sequence Detail	141	C57BL/6

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UniProt

2 Sequences

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All nucleic 6

cDNA 6

Microarray probesets 3

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MGI:1917478, MGI:6362627

Summaries

All 22

Gene Ontology 2

Phenotypes 7
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;

TSS for Rps23rg1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76058	Chr8:3617958-3618006 (+)	-16 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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