Mir488 Gene Detail

Summary

• Symbol
  Mir488
• Name
  microRNA 488
• Synonyms
  mir 488, Mirn488, mmu-mir-488

• Feature Type
  miRNA gene
• IDs
  MGI:3629597
  NCBI Gene: 735253
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:158333195-158333303 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 68.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3629597	miRNA gene	Chr1:158333195-158333303 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007670	miRNA gene	Chr1:163610714-163610822 (+)
A/J	MGP_AJ_G0007664	miRNA gene	Chr1:156976061-156976169 (+)
AKR/J	MGP_AKRJ_G0007638	miRNA gene	Chr1:161778495-161778603 (+)
BALB/cJ	MGP_BALBcJ_G0007642	miRNA gene	Chr1:157504384-157504492 (+)
C3H/HeJ	MGP_C3HHeJ_G0007586	miRNA gene	Chr1:161932560-161932668 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007816	miRNA gene	Chr1:169192275-169192383 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006980	miRNA gene	Chr1:149151161-149151269 (+)
CAST/EiJ	MGP_CASTEiJ_G0007484	miRNA gene	Chr1:161494061-161494169 (+)
CBA/J	MGP_CBAJ_G0007561	miRNA gene	Chr1:175187064-175187172 (+)
DBA/2J	MGP_DBA2J_G0007595	miRNA gene	Chr1:155929702-155929810 (+)
FVB/NJ	MGP_FVBNJ_G0007611	miRNA gene	Chr1:154377619-154377727 (+)
LP/J	MGP_LPJ_G0007675	miRNA gene	Chr1:164712213-164712321 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007585	miRNA gene	Chr1:182739648-182739756 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007817	miRNA gene	Chr1:161613002-161613110 (+)
PWK/PhJ	MGP_PWKPhJ_G0007417	miRNA gene	Chr1:155057013-155057121 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007319	miRNA gene	Chr1:160400971-160401079 (+)
WSB/EiJ	MGP_WSBEiJ_G0007552	miRNA gene	Chr1:161736008-161736116 (+)

Homology

• Human Ortholog
  MIR488, microRNA 488

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  MIR488, microRNA 488
  
• Synonyms
  hsa-mir-488, mir-488, MIRN488
• Links
  HGNC:32073

  NCBI Gene ID: 574441

  
  
• Chr Location
  chr1:177029363-177029445 (-)  GRCh38

---

• MGI Vertebrate Homology
  Mir488 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: MIR488
• Gene Tree
  Mir488
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Mir488
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  710
• Tissues
  2
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000070103 (Evidence)
• NCBI Gene
  735253

Representative Sequences			Length	Strain/Species
genomic	735253	NCBI Gene Model | MGI Sequence Detail	109	C57BL/6J
transcript	NR_030441	RefSeq | MGI Sequence Detail	109	C57BL/6

Molecular
Reagents

• All nucleic 2

  Primer pair 1

  Other 1

Other Database
Links

miRBase

MI0004633

References

• Summaries
  All 10

  Developmental Gene Expression 2

  Phenotypes 2
• Earliest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4
• Latest
  J:183008 Li Y, et al., Isolation of fetal gonads from embryos of timed-pregnant mice for morphological and molecular studies. Methods Mol Biol. 2012;825:3-16