About   Help   FAQ
Mir680-1 Gene Detail
Summary
  • Symbol
    Mir680-1
  • Name
    microRNA 680-1
  • Synonyms
    mir 680-1, Mirn680-1, mmu-mir-680-1
  • Feature Type
    miRNA gene
  • IDs
    MGI:3629682
    NCBI Gene: 735268
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr6:129668498-129668606 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 63.44 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    67 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3629682
 miRNA gene Chr6:129668498-129668606 (+)
129S1/SvImJ MGP_129S1SvImJ_G0008951
 miRNA gene Chr6:133362845-133362953 (+)
A/J MGP_AJ_G0008938
 miRNA gene Chr6:128249018-128249126 (+)
AKR/J MGP_AKRJ_G0008925
 miRNA gene Chr6:131752882-131752990 (+)
BALB/cJ MGP_BALBcJ_G0008925
 miRNA gene Chr6:127902708-127902816 (+)
C3H/HeJ MGP_C3HHeJ_G0008863
 miRNA gene Chr6:131947663-131947771 (+)
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0008702
 miRNA gene Chr6:132212564-132212672 (+)
CBA/J MGP_CBAJ_G0008832
 miRNA gene Chr6:142241807-142241915 (+)
DBA/2J MGP_DBA2J_G0008863
 miRNA gene Chr6:127201533-127201641 (+)
FVB/NJ MGP_FVBNJ_G0008880
 miRNA gene Chr6:126094560-126094668 (+)
LP/J MGP_LPJ_G0008956
 miRNA gene Chr6:133573426-133573534 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0008843
 miRNA gene Chr6:146129800-146129908 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0009127
 miRNA gene Chr6:131827774-131827882 (+)
PWK/PhJ MGP_PWKPhJ_G0008632
 miRNA gene Chr6:125490834-125490942 (+)
SPRET/EiJ MGP_SPRETEiJ_G0008475
 miRNA gene Chr6:129850901-129851010 (+)
WSB/EiJ MGP_WSBEiJ_G0008798
 miRNA gene Chr6:132276310-132276418 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    727
  • Tissues
    4
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    20
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 735268 NCBI Gene Model | MGI Sequence Detail 109 C57BL/6J ±  kb
transcript NR_030447 RefSeq | MGI Sequence Detail 109 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    Other 1
Other Database
Links
less
miRBase MI0004640
References
more
  • Summaries
    All 9
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 1
  • Earliest
    J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4
  • Latest
    J:174268 Prosser HM, et al., A resource of vectors and ES cells for targeted deletion of microRNAs in mice. Nat Biotechnol. 2011 Aug 7;29(9):840-5
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory