Gm9945 Gene Detail

Summary

• Symbol
  Gm9945
• Name
  predicted gene 9945

• Feature Type
  protein coding gene
• IDs
  MGI:3641652
  NCBI Gene: 791266
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:53370993-53371924 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 31.95 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641652	protein coding gene	Chr11:53370993-53371924 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0018297	protein coding gene	Chr11:52866112-52867033 (+)
A/J	MGP_AJ_G0018266	protein coding gene	Chr11:50881563-50882478 (+)
AKR/J	MGP_AKRJ_G0018236	protein coding gene	Chr11:52546161-52547078 (+)
BALB/cJ	MGP_BALBcJ_G0018237	protein coding gene	Chr11:51238849-51239780 (+)
C3H/HeJ	MGP_C3HHeJ_G0018048	protein coding gene	Chr11:52510719-52511646 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0018689	protein coding gene	Chr11:54458836-54459753 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0016339	protein coding gene	Chr11:48423927-48424838 (+)
CAST/EiJ	MGP_CASTEiJ_G0017613	protein coding gene	Chr11:52556760-52557693 (+)
CBA/J	MGP_CBAJ_G0018023	protein coding gene	Chr11:57033678-57034607 (+)
DBA/2J	MGP_DBA2J_G0018133	protein coding gene	Chr11:50629724-50630645 (+)
FVB/NJ	MGP_FVBNJ_G0018125	protein coding gene	Chr11:50269101-50270018 (+)
LP/J	MGP_LPJ_G0018207	protein coding gene	Chr11:53317092-53318030 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0018149	protein coding gene	Chr11:58361262-58362195 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0018731	protein coding gene	Chr11:52571506-52572431 (+)
PWK/PhJ	MGP_PWKPhJ_G0017388	protein coding gene	Chr11:51144574-51145555 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0017183	protein coding gene	Chr11:52394648-52395581 (+)
WSB/EiJ	MGP_WSBEiJ_G0017660	protein coding gene	Chr11:52211268-52212197 (+)

Homology

• Gene Tree
  Gm9945
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm9945
• Incidental Mutations
  Mutagenetix
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000054450 (Evidence)
• NCBI Gene
  791266

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000054450	Ensembl Gene Model | MGI Sequence Detail	932	C57BL/6J
transcript	NR_188986	RefSeq | MGI Sequence Detail	2483	C57BL/6
polypeptide	Q8BNZ3	UniProt | EBI | MGI Sequence Detail	91	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm9945:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101406	Chr11:53369678-53369685 (+)	-1,311 bp