Gm10088 Pseudogene Detail

Summary

• Symbol
  Gm10088
• Name
  predicted gene 10088

• Feature Type
  pseudogene
• IDs
  MGI:3641695
  NCBI Gene: 100504250
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr16:18846982-18847404 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 11.78 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  25 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641695	pseudogene	Chr16:18846956-18848332 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011252	pseudogene	Chr16:16298951-16299373 (+)
A/J	MGP_AJ_G0011236	pseudogene	Chr16:15492756-15493178 (+)
AKR/J	MGP_AKRJ_G0011199	pseudogene	Chr16:16116359-16116781 (+)
BALB/cJ	MGP_BALBcJ_G0011206	pseudogene	Chr16:15646440-15646862 (+)
C3H/HeJ	MGP_C3HHeJ_G0011103	pseudogene	Chr16:16268896-16271334 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011500	pseudogene	Chr16:16615725-16616147 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010489	pseudogene	Chr2:72059943-72060291 (-)
CAST/EiJ	MGP_CASTEiJ_G0010927	pseudogene	Chr16:16153687-16154109 (+)
CBA/J	MGP_CBAJ_G0011084	pseudogene	Chr16:17312333-17312755 (+)
DBA/2J	MGP_DBA2J_G0011131	pseudogene	Chr16:15397353-15397775 (+)
FVB/NJ	MGP_FVBNJ_G0011135	pseudogene	Chr16:15466625-15467047 (+)
LP/J	MGP_LPJ_G0011227	pseudogene	Chr16:16048061-16048483 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011130	pseudogene	Chr16:16938056-16938478 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011483	pseudogene	Chr16:16039851-16040273 (+)
PWK/PhJ	MGP_PWKPhJ_G0010804	pseudogene	Chr16:15686735-15687278 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0010975	pseudogene	Chr16:16061777-16062199 (+)

Homology

• Gene Tree
  Gm10088
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000060811 (Evidence)
• NCBI Gene
  100504250

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000060811	Ensembl Gene Model | MGI Sequence Detail	423	C57BL/6J
transcript	ENSMUST00000074116	Ensembl | MGI Sequence Detail	423	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;