Runx2os1 Gene Detail

Summary

• Symbol
  Runx2os1
• Name
  runt related transcription factor 2, opposite strand 1
• Synonyms
  Gm10497

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3641707
  NCBI Gene: 100038355
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr17:45045606-45048508 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 21.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641707	antisense lncRNA gene	Chr17:45045606-45048508 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003409	antisense lncRNA gene	Chr17:45710010-45711781 (+)
A/J	MGP_AJ_G0003387	antisense lncRNA gene	Chr17:44644430-44646170 (+)
AKR/J	MGP_AKRJ_G0003368	antisense lncRNA gene	Chr17:44922453-44924221 (+)
BALB/cJ	MGP_BALBcJ_G0003376	antisense lncRNA gene	Chr17:44521830-44523578 (+)
C3H/HeJ	MGP_C3HHeJ_G0003326	antisense lncRNA gene	Chr17:45632030-45633778 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003516	antisense lncRNA gene	Chr17:47710615-47712382 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003030	antisense lncRNA gene	Chr17:41447507-41449241 (+)
CAST/EiJ	MGP_CASTEiJ_G0003288	antisense lncRNA gene	Chr17:45707658-45709409 (+)
CBA/J	MGP_CBAJ_G0003322	antisense lncRNA gene	Chr17:49389296-49391063 (+)
DBA/2J	MGP_DBA2J_G0003331	antisense lncRNA gene	Chr17:43437389-43439141 (+)
FVB/NJ	MGP_FVBNJ_G0003349	antisense lncRNA gene	Chr17:43002839-43004605 (+)
LP/J	MGP_LPJ_G0003403	antisense lncRNA gene	Chr17:46375668-46377412 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003337	antisense lncRNA gene	Chr17:48987336-48989104 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003518	antisense lncRNA gene	Chr17:45285985-45287742 (+)
PWK/PhJ	MGP_PWKPhJ_G0003247	antisense lncRNA gene	Chr17:42721066-42722841 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003192	antisense lncRNA gene	Chr17:42149180-42150948 (+)
WSB/EiJ	MGP_WSBEiJ_G0003325	antisense lncRNA gene	Chr17:45804586-45806343 (+)

Homology

• Gene Tree
  Runx2os1
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• UniProt
  1

• Ensembl
  ENSMUSG00000073394 (Evidence)
• NCBI Gene
  100038355

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073394	Ensembl Gene Model | MGI Sequence Detail	2903	C57BL/6J
transcript	ENSMUST00000097320	Ensembl | MGI Sequence Detail	801	Not Applicable
polypeptide	Q3TXX5	UniProt | EBI | MGI Sequence Detail	183	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Runx2os1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144758	Chr17:45045030-45045062 (+)	-560 bp
Tssr144759	Chr17:45046654-45046670 (+)	1,056 bp
Tssr144760	Chr17:45047095-45047106 (+)	1,495 bp