Gm10030 Gene Detail

Summary

• Symbol
  Gm10030
• Name
  predicted gene 10030

• Feature Type
  lncRNA gene
• IDs
  MGI:3641798
  NCBI Gene: 791282
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:110818567-110837097 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 60.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  695 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641798	lncRNA gene	Chr9:110818567-110837135 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015762	unclassified non-coding RNA gene	Chr9:113184686-113205077 (+)
A/J	MGP_AJ_G0015739	unclassified non-coding RNA gene	Chr9:109056350-109075452 (+)
AKR/J	MGP_AKRJ_G0015702	unclassified non-coding RNA gene	Chr9:111765519-111795411 (+)
BALB/cJ	MGP_BALBcJ_G0015700	unclassified non-coding RNA gene	Chr9:108808520-108827310 (+)
C3H/HeJ	MGP_C3HHeJ_G0015521	unclassified non-coding RNA gene	Chr9:112275497-112294701 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016155	unclassified non-coding RNA gene	Chr9:116306412-116331439 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013880	unclassified non-coding RNA gene	Chr9:106269172-106288549 (+)
CAST/EiJ	MGP_CASTEiJ_G0015076	unclassified non-coding RNA gene	Chr9:112078956-112097146 (+)
CBA/J	MGP_CBAJ_G0015501	unclassified non-coding RNA gene	Chr9:120582832-120603688 (+)
DBA/2J	MGP_DBA2J_G0015600	unclassified non-coding RNA gene	Chr9:108512125-108531361 (+)
FVB/NJ	MGP_FVBNJ_G0015605	unclassified non-coding RNA gene	Chr9:107356016-107374402 (+)
LP/J	MGP_LPJ_G0015680	unclassified non-coding RNA gene	Chr9:113473939-113494940 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015628	unclassified non-coding RNA gene	Chr9:121901917-121920558 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016198	unclassified non-coding RNA gene	Chr9:112121988-112141178 (+)
PWK/PhJ	MGP_PWKPhJ_G0014859	unclassified non-coding RNA gene	Chr9:108757062-108775573 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014646	unclassified non-coding RNA gene	Chr9:112209471-112227676 (+)
WSB/EiJ	MGP_WSBEiJ_G0015180	unclassified non-coding RNA gene	Chr9:111988510-112008953 (+)

Homology

• Gene Tree
  Gm10030
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  5
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000057802 (Evidence)
• NCBI Gene
  791282

Representative Sequences			Length	Strain/Species
genomic	791282	NCBI Gene Model | MGI Sequence Detail	18531	C57BL/6J
transcript	NR_152179	RefSeq | MGI Sequence Detail	3824	C57BL/6
polypeptide	Q8C346	UniProt | EBI | MGI Sequence Detail	102	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm10030:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87453	Chr9:110821840-110821862 (+)	3,284 bp
Tssr87454	Chr9:110821883-110821888 (+)	3,319 bp