Gm10237 Pseudogene Detail

Summary

• Symbol
  Gm10237
• Name
  predicted gene 10237

• Feature Type
  pseudogene
• IDs
  MGI:3641816
  NCBI Gene: 108168272
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:35740834-35741169 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 25.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641816	pseudogene	Chr16:35739535-35741199 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011272	pseudogene	Chr16:34271724-34271996 (+)
A/J	MGP_AJ_G0011256	pseudogene	Chr16:32609653-32609925 (+)
AKR/J	MGP_AKRJ_G0011219	pseudogene	Chr16:33752942-33753214 (+)
BALB/cJ	MGP_BALBcJ_G0011227	pseudogene	Chr16:32733552-32733824 (+)
C3H/HeJ	MGP_C3HHeJ_G0011124	pseudogene	Chr16:33880659-33880931 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011519	pseudogene	Chr16:35005540-35005812 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0010951	pseudogene	Chr16:34107118-34107390 (+)
CBA/J	MGP_CBAJ_G0011104	pseudogene	Chr16:36426727-36426999 (+)
DBA/2J	MGP_DBA2J_G0011151	pseudogene	Chr16:32433972-32434244 (+)
FVB/NJ	MGP_FVBNJ_G0011154	pseudogene	Chr16:32431273-32431545 (+)
LP/J	MGP_LPJ_G0011247	pseudogene	Chr16:34003243-34003515 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011148	pseudogene	Chr16:35702675-35702947 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011501	pseudogene	Chr16:33808813-33809085 (+)
PWK/PhJ	MGP_PWKPhJ_G0010822	pseudogene	Chr16:32844438-32844710 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010649	pseudogene	Chr16:33625743-33626015 (+)
WSB/EiJ	MGP_WSBEiJ_G0010994	pseudogene	Chr16:33732702-33733065 (+)

Homology

• Gene Tree
  Gm10237
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000062279 (Evidence)
• NCBI Gene
  108168272

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000062279	Ensembl Gene Model | MGI Sequence Detail	336	C57BL/6J
transcript	ENSMUST00000078393	Ensembl | MGI Sequence Detail	336	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm10237:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr138229	Chr16:35739766-35739779 (+)	-1,061 bp