M5C1000I18Rik Gene Detail

Summary

• Symbol
  M5C1000I18Rik
• Name
  RIKEN cDNA M5C1000I18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3642038
  NCBI Gene: 102633151
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:67665995-67667512 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 36.72 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642038	lncRNA gene	Chr9:67665994-67667512 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0007448	lincRNA gene	Chr9:67671480-67672998 (-)
A/J	MGP_AJ_G0007443	lincRNA gene	Chr9:65346515-65348033 (-)
AKR/J	MGP_AKRJ_G0007416	lincRNA gene	Chr9:66893125-66894643 (-)
BALB/cJ	MGP_BALBcJ_G0007421	lincRNA gene	Chr9:65084072-65085590 (-)
C3H/HeJ	MGP_C3HHeJ_G0007365	lincRNA gene	Chr9:67440752-67442270 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007592	lincRNA gene	Chr9:69521080-69524300 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006781	lincRNA gene	Chr9:64970416-64971937 (-)
CAST/EiJ	MGP_CASTEiJ_G0007269	lincRNA gene	Chr9:67664091-67665619 (-)
CBA/J	MGP_CBAJ_G0007347	lincRNA gene	Chr9:71909644-71911162 (-)
DBA/2J	MGP_DBA2J_G0007371	lincRNA gene	Chr9:65093546-65095064 (-)
FVB/NJ	MGP_FVBNJ_G0007389	lincRNA gene	Chr9:64434327-64435850 (-)
LP/J	MGP_LPJ_G0007453	lincRNA gene	Chr9:67942674-67944192 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007369	lincRNA gene	Chr9:73087298-73088816 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007596	lincRNA gene	Chr9:67016120-67017638 (-)
PWK/PhJ	MGP_PWKPhJ_G0007210	lincRNA gene	Chr9:65333537-65335061 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0007114	lincRNA gene	Chr9:67315537-67316893 (-)
WSB/EiJ	MGP_WSBEiJ_G0007329	lincRNA gene	Chr9:66911249-66912767 (-)

Homology

• Gene Tree
  M5C1000I18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving M5C1000I18Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000055125 (Evidence)
• NCBI Gene
  102633151

Representative Sequences			Length	Strain/Species
genomic	102633151	NCBI Gene Model | MGI Sequence Detail	1518	C57BL/6J
transcript	NR_153961	RefSeq | MGI Sequence Detail	1414	C57BL/6
polypeptide	Q3UHS1	UniProt | EBI | MGI Sequence Detail	122	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;