Gm10649 Gene Detail

Summary

• Symbol
  Gm10649
• Name
  predicted gene 10649

• Feature Type
  lncRNA gene
• IDs
  MGI:3642042
  NCBI Gene: 102640923
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:77475715-77627249 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 36.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3948 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642042	lncRNA gene	Chr8:77331854-77627249 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015717	unclassified non-coding RNA gene	Chr8:77134586-77454223 (-)
A/J	MGP_AJ_G0015695	unclassified non-coding RNA gene	Chr8:74065576-74363766 (-)
AKR/J	MGP_AKRJ_G0015658	unclassified non-coding RNA gene	Chr8:76297878-76593530 (-)
BALB/cJ	MGP_BALBcJ_G0015656	unclassified non-coding RNA gene	Chr8:74143059-74463345 (-)
C3H/HeJ	MGP_C3HHeJ_G0015478	unclassified non-coding RNA gene	Chr8:76896431-77200622 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016111	unclassified non-coding RNA gene	Chr8:80084710-80429010 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013839	unclassified non-coding RNA gene	Chr8:68326197-68467222 (-)
CAST/EiJ	MGP_CASTEiJ_G0015033	unclassified non-coding RNA gene	Chr8:76173483-76505972 (-)
CBA/J	MGP_CBAJ_G0015459	unclassified non-coding RNA gene	Chr8:82907282-83243402 (-)
DBA/2J	MGP_DBA2J_G0015555	unclassified non-coding RNA gene	Chr8:73776868-74073272 (-)
FVB/NJ	MGP_FVBNJ_G0015561	unclassified non-coding RNA gene	Chr8:72778739-73074337 (-)
LP/J	MGP_LPJ_G0015635	unclassified non-coding RNA gene	Chr8:77186022-77499783 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015583	unclassified non-coding RNA gene	Chr8:85599566-85933620 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016153	unclassified non-coding RNA gene	Chr8:76275327-76604000 (-)
PWK/PhJ	MGP_PWKPhJ_G0014814	unclassified non-coding RNA gene	Chr8:73141773-73297843 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014603	unclassified non-coding RNA gene	Chr8:75133490-75446236 (-)
WSB/EiJ	MGP_WSBEiJ_G0015137	unclassified non-coding RNA gene	Chr8:76602359-76925121 (-)

Homology

• Gene Tree
  Gm10649
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm10649
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000074235 (Evidence)
• NCBI Gene
  102640923

Representative Sequences			Length	Strain/Species
genomic	102640923	NCBI Gene Model | MGI Sequence Detail	151535	C57BL/6J
transcript	NR_028579	RefSeq | MGI Sequence Detail	1985	C57BL/6
polypeptide	Q3TRA9	UniProt | EBI | MGI Sequence Detail	58	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm10649:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr81824	Chr8:77628637-77628651 (-)	-1,395 bp