Gm10787 Gene Detail

Summary

• Symbol
  Gm10787
• Name
  predicted gene 10787

• Feature Type
  lncRNA gene
• IDs
  MGI:3642150
  NCBI Gene: 100038479
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:76847829-76858048 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 39.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  428 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642150	lncRNA gene	Chr10:76847829-76858048 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0017391	protein coding gene	Chr10:77284636-77295559 (+)
A/J	MGP_AJ_G0017368	protein coding gene	Chr10:74617521-74627534 (+)
AKR/J	MGP_AKRJ_G0017329	protein coding gene	Chr10:76622865-76632520 (+)
BALB/cJ	MGP_BALBcJ_G0017328	protein coding gene	Chr10:74811723-74821708 (+)
C3H/HeJ	MGP_C3HHeJ_G0017152	protein coding gene	Chr10:76696845-76706938 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0017786	protein coding gene	Chr10:79994787-80005887 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015476	protein coding gene	Chr10:71044584-71054055 (+)
CAST/EiJ	MGP_CASTEiJ_G0016722	protein coding gene	Chr10:77039544-77049123 (+)
CBA/J	MGP_CBAJ_G0017124	protein coding gene	Chr10:83123436-83136915 (+)
DBA/2J	MGP_DBA2J_G0017229	protein coding gene	Chr10:73905529-73917653 (+)
FVB/NJ	MGP_FVBNJ_G0017221	protein coding gene	Chr10:73067033-73076624 (+)
LP/J	MGP_LPJ_G0017302	protein coding gene	Chr10:77763383-77773058 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0017250	protein coding gene	Chr10:85168064-85179510 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0017825	protein coding gene	Chr10:76684407-76694111 (+)
PWK/PhJ	MGP_PWKPhJ_G0016506	protein coding gene	Chr10:73763051-73772649 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0016289	protein coding gene	Chr10:75921641-75931183 (+)
WSB/EiJ	MGP_WSBEiJ_G0016785	protein coding gene	Chr10:76660392-76671170 (+)

Homology

• Gene Tree
  Gm10787
  

Human Diseases

• References
  2 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  26 phenotype references
  

• All Mutations and Alleles
  5
• Endonuclease-mediated
  1
• Gene trapped
  1
• Targeted
  3
• Genomic Mutations
  3 involving Gm10787
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  5 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000074919 (Evidence)
• NCBI Gene
  100038479

Representative Sequences			Length	Strain/Species
genomic	100038479	NCBI Gene Model | MGI Sequence Detail	10220	C57BL/6J
transcript	NR_045882	RefSeq | MGI Sequence Detail	1548	C57BL/6
polypeptide	Q3UP50	UniProt | EBI | MGI Sequence Detail	122	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 34

  Diseases 2

  Phenotypes 26
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:351211 Wu Y, et al., Cathepsin B abundance, activity and microglial localisation in Alzheimer's disease-Down syndrome and early onset Alzheimer's disease; the role of elevated cystatin B. Acta Neuropathol Commun. 2023 Aug 14;11(1):132

TSS for Gm10787:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94202	Chr10:76847818-76847839 (+)	0 bp