Gm9748 Gene Detail

Summary

• Symbol
  Gm9748
• Name
  predicted gene 9748

• Feature Type
  lncRNA gene
• IDs
  MGI:3642166
  NCBI Gene: 102633266
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr14:80007348-80010182 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642166	lncRNA gene	Chr14:80007348-80010183 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003270	antisense lncRNA gene	Chr14:74925811-74928646 (+)
A/J	MGP_AJ_G0003246	antisense lncRNA gene	Chr14:73053592-73056427 (+)
AKR/J	MGP_AKRJ_G0003229	antisense lncRNA gene	Chr14:75225263-75228098 (+)
BALB/cJ	MGP_BALBcJ_G0003235	antisense lncRNA gene	Chr14:72909784-72912619 (+)
C3H/HeJ	MGP_C3HHeJ_G0003188	antisense lncRNA gene	Chr14:74952011-74954846 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003377	antisense lncRNA gene	Chr14:78086115-78088950 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002901	antisense lncRNA gene	Chr14:70579812-70582642 (+)
CAST/EiJ	MGP_CASTEiJ_G0003154	antisense lncRNA gene	Chr14:71748083-71750918 (+)
CBA/J	MGP_CBAJ_G0003185	antisense lncRNA gene	Chr14:80601181-80604016 (+)
DBA/2J	MGP_DBA2J_G0003190	antisense lncRNA gene	Chr14:72449008-72451844 (+)
FVB/NJ	MGP_FVBNJ_G0003209	antisense lncRNA gene	Chr14:71787770-71790605 (+)
LP/J	MGP_LPJ_G0003263	antisense lncRNA gene	Chr14:76012132-76014967 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003198	antisense lncRNA gene	Chr14:79253954-79256789 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003379	antisense lncRNA gene	Chr14:74535465-74538300 (+)
PWK/PhJ	MGP_PWKPhJ_G0003112	antisense lncRNA gene	Chr14:69247308-69250143 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003058	antisense lncRNA gene	Chr14:70504560-70507392 (+)
WSB/EiJ	MGP_WSBEiJ_G0003188	antisense lncRNA gene	Chr14:74897275-74900110 (+)

Homology

• Gene Tree
  Gm9748
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm9748
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000102774 (Evidence)
• NCBI Gene
  102633266

Representative Sequences			Length	Strain/Species
genomic	102633266	NCBI Gene Model | MGI Sequence Detail	2835	C57BL/6J
transcript	NR_154549	RefSeq | MGI Sequence Detail	782	ZRU/MplStud
polypeptide	Q9CVQ7	UniProt | EBI | MGI Sequence Detail	163	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;

TSS for Gm9748:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr126824	Chr14:80007326-80007337 (+)	-16 bp
Tssr126825	Chr14:80007338-80007350 (+)	-4 bp
Tssr126826	Chr14:80007357-80007362 (+)	12 bp
Tssr126827	Chr14:80007366-80007375 (+)	23 bp