Gm9888 Gene Detail

Summary

• Symbol
  Gm9888
• Name
  predicted gene 9888

• Feature Type
  lncRNA gene
• IDs
  MGI:3642202
  NCBI Gene: 100038631
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:114609168-114611325 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 65.18 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  210 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642202	lncRNA gene	Chr9:114609168-114611325 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004703	antisense lncRNA gene	Chr9:117241675-117243833 (+)
A/J	MGP_AJ_G0004683	antisense lncRNA gene	Chr9:112946895-112949049 (+)
AKR/J	MGP_AKRJ_G0004666	antisense lncRNA gene	Chr9:115821528-115823684 (+)
BALB/cJ	MGP_BALBcJ_G0004667	antisense lncRNA gene	Chr9:112752994-112755148 (+)
C3H/HeJ	MGP_C3HHeJ_G0004615	antisense lncRNA gene	Chr9:116320171-116322325 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004816	antisense lncRNA gene	Chr9:120459377-120461887 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004258	antisense lncRNA gene	Chr9:110243742-110245901 (+)
CAST/EiJ	MGP_CASTEiJ_G0004572	antisense lncRNA gene	Chr9:116186665-116188828 (+)
CBA/J	MGP_CBAJ_G0004610	antisense lncRNA gene	Chr9:124968730-124970887 (+)
DBA/2J	MGP_DBA2J_G0004625	antisense lncRNA gene	Chr9:112418810-112420967 (+)
FVB/NJ	MGP_FVBNJ_G0004643	antisense lncRNA gene	Chr9:111246297-111248451 (+)
LP/J	MGP_LPJ_G0004707	antisense lncRNA gene	Chr9:117580322-117582480 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004629	antisense lncRNA gene	Chr9:126187000-126189164 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004816	antisense lncRNA gene	Chr9:116195882-116198064 (+)
PWK/PhJ	MGP_PWKPhJ_G0004524	antisense lncRNA gene	Chr9:112728509-112730730 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004461	antisense lncRNA gene	Chr9:116239450-116241604 (+)
WSB/EiJ	MGP_WSBEiJ_G0004615	antisense lncRNA gene	Chr9:116078130-116081552 (+)

Homology

• Gene Tree
  Gm9888
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000052724 (Evidence)
• NCBI Gene
  100038631

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000052724	Ensembl Gene Model | MGI Sequence Detail	2158	C57BL/6J
transcript	ENSMUST00000150678	Ensembl | MGI Sequence Detail	965	Not Applicable
polypeptide	Q8C9E7	UniProt | EBI | MGI Sequence Detail	177	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22

TSS for Gm9888:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87581	Chr9:114610154-114610193 (+)	1,006 bp