Gm10827 Gene Detail

Summary

• Symbol
  Gm10827
• Name
  predicted gene 10827

• Feature Type
  lncRNA gene
• IDs
  MGI:3642321
  NCBI Gene: 118567828
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:18110801-18121767 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 7.54 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  405 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642321	lncRNA gene	Chr10:18110801-18130495 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005104	lincRNA gene	Chr10:15906720-15909692 (+)
A/J	MGP_AJ_G0005087	lincRNA gene	Chr10:15302352-15306122 (+)
AKR/J	MGP_AKRJ_G0005065	lincRNA gene	Chr10:15541566-15544574 (+)
BALB/cJ	MGP_BALBcJ_G0005068	lincRNA gene	Chr10:15366284-15369238 (+)
C3H/HeJ	MGP_C3HHeJ_G0005017	lincRNA gene	Chr10:15884305-15888463 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005218	lincRNA gene	Chr10:16292907-16295914 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0004964	lincRNA gene	Chr10:15676758-15679763 (+)
CBA/J	MGP_CBAJ_G0005007	lincRNA gene	Chr10:17024322-17027311 (+)
DBA/2J	MGP_DBA2J_G0005026	lincRNA gene	Chr10:15192609-15195714 (+)
FVB/NJ	MGP_FVBNJ_G0005048	lincRNA gene	Chr10:14955347-14959580 (+)
LP/J	MGP_LPJ_G0005105	lincRNA gene	Chr10:15729376-15732310 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005031	lincRNA gene	Chr10:17374541-17377595 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005225	lincRNA gene	Chr10:15513412-15516419 (+)
PWK/PhJ	MGP_PWKPhJ_G0004915	lincRNA gene	Chr10:15010015-15018718 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004840	lincRNA gene	Chr10:15672267-15675180 (+)
WSB/EiJ	MGP_WSBEiJ_G0005011	lincRNA gene	Chr10:15598542-15602742 (+)

Homology

• Gene Tree
  Gm10827
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm10827
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000096977 (Evidence)
• NCBI Gene
  118567828

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096977	Ensembl Gene Model | MGI Sequence Detail	10967	C57BL/6J
transcript	ENSMUST00000181897	Ensembl | MGI Sequence Detail	2586	Not Applicable
polypeptide	Q3V0D3	UniProt | EBI | MGI Sequence Detail	80	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm10827:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92471	Chr10:18110778-18110802 (+)	-11 bp