Gm10036 Pseudogene Detail

Summary

• Symbol
  Gm10036
• Name
  predicted gene 10036

• Feature Type
  pseudogene
• IDs
  MGI:3642334
  NCBI Gene: 100040551
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:15965851-15966384 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 9.77 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642334	pseudogene	Chr18:15965831-15966427 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0024136	protein coding gene	Chr18:12870359-12871101 (+)
AKR/J	MGP_AKRJ_G0024103	protein coding gene	Chr18:13298825-13299597 (+)
BALB/cJ	MGP_BALBcJ_G0024135	protein coding gene	Chr18:12814297-12815838 (+)
C3H/HeJ	MGP_C3HHeJ_G0023902	protein coding gene	Chr18:13152938-13154760 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0021671	protein coding gene	Chr17:43150200-43150786 (-)
CAST/EiJ	MGP_CASTEiJ_G0023379	protein coding gene	Chr18:13060077-13062679 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0024003	protein coding gene	Chr18:12685139-12685675 (+)
FVB/NJ	MGP_FVBNJ_G0023968	protein coding gene	Chr18:12536334-12536996 (+)
LP/J	MGP_LPJ_G0024086	protein coding gene	Chr18:13280138-13280828 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0023997	protein coding gene	Chr18:14101880-14102672 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0024626	protein coding gene	Chr18:13030576-13031328 (+)
PWK/PhJ	MGP_PWKPhJ_G0028167	protein coding gene	Chr5:20352051-20352628 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0028655	protein coding gene	Chr5:119195893-119200169 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm10036
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  9 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000058064 (Evidence)
• NCBI Gene
  100040551

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000058064	Ensembl Gene Model | MGI Sequence Detail	534	C57BL/6J
transcript	ENSMUST00000079733	Ensembl | MGI Sequence Detail	534	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm10036:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150149	Chr18:15965829-15965831 (+)	-21 bp