Rpl30-ps11 Pseudogene Detail

Summary

• Symbol
  Rpl30-ps11
• Name
  ribosomal protein L30, pseudogene 11
• Synonyms
  EG628441, ENSMUSG00000057869, Gm14522

• Feature Type
  pseudogene
• IDs
  MGI:3642364
  NCBI Gene: 628441
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:12323125-12323469 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 7.28 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642364	pseudogene	ChrX:12323099-12323539 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014309	pseudogene	ChrX:7269503-7269847 (-)
A/J	MGP_AJ_G0014319	pseudogene	ChrX:7377736-7378537 (-)
AKR/J	MGP_AKRJ_G0014246	pseudogene	ChrX:7584323-7584678 (-)
BALB/cJ	MGP_BALBcJ_G0014267	pseudogene	ChrX:7230600-7230944 (-)
C3H/HeJ	MGP_C3HHeJ_G0014102	pseudogene	ChrX:7377854-7378198 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014727	pseudogene	ChrX:7455476-7455820 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0014087	pseudogene	ChrX:7835377-7835721 (-)
DBA/2J	MGP_DBA2J_G0014165	pseudogene	ChrX:7219789-7220133 (-)
FVB/NJ	MGP_FVBNJ_G0014164	pseudogene	ChrX:7054193-7054537 (-)
LP/J	MGP_LPJ_G0014261	pseudogene	ChrX:7458684-7459028 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014203	pseudogene	ChrX:7753826-7754247 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014696	pseudogene	ChrX:7182552-7182974 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rpl30-ps11
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000081461 (Evidence)
• NCBI Gene
  628441

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081461	Ensembl Gene Model | MGI Sequence Detail	345	C57BL/6J
transcript	ENSMUST00000119630	Ensembl | MGI Sequence Detail	345	Not Applicable

Other
Accession IDs

MGI:3647226

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rpl30-ps11:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162996	ChrX:12323531-12323541 (-)	-67 bp