Gm10269 Pseudogene Detail

Summary

• Symbol
  Gm10269
• Name
  predicted gene 10269

• Feature Type
  pseudogene
• IDs
  MGI:3642381
  NCBI Gene: 100040823
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:20815651-20816020 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 11.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642381	pseudogene	Chr18:20815614-20816059 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0024182	protein coding gene	Chr18:18261315-18261686 (-)
A/J	MGP_AJ_G0024146	protein coding gene	Chr18:17806046-17806417 (-)
AKR/J	MGP_AKRJ_G0024115	protein coding gene	Chr18:18340037-18340408 (-)
BALB/cJ	MGP_BALBcJ_G0024146	protein coding gene	Chr18:17819190-17819561 (-)
C3H/HeJ	MGP_C3HHeJ_G0023914	protein coding gene	Chr18:18264061-18264432 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0023882	protein coding gene	Chr18:19621081-19621452 (-)
DBA/2J	MGP_DBA2J_G0024014	protein coding gene	Chr18:17517020-17517527 (-)
FVB/NJ	MGP_FVBNJ_G0023980	protein coding gene	Chr18:17294702-17295073 (-)
LP/J	MGP_LPJ_G0030090	protein coding gene	Chr5:140637064-140637386 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0024008	protein coding gene	Chr18:20539538-20540588 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0024636	protein coding gene	Chr18:18092577-18092948 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0020958	protein coding gene	Chr15:81484684-81485128 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm10269
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000091449 (Evidence)
• NCBI Gene
  100040823

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091449	Ensembl Gene Model | MGI Sequence Detail	370	C57BL/6J
transcript	ENSMUST00000165229	Ensembl | MGI Sequence Detail	370	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm10269:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152592	Chr18:20816058-20816063 (-)	-41 bp