Gm15163 Pseudogene Detail

Summary

• Symbol
  Gm15163
• Name
  predicted gene 15163
• Synonyms
  EG434885, ENSMUSG00000049329

• Feature Type
  pseudogene
• IDs
  MGI:3642430
  NCBI Gene: 434885
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:155799225-155800526 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 72.38 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  70 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642430	pseudogene	ChrX:155798327-155800558 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014955	pseudogene	ChrX:154892921-154894396 (-)
A/J	MGP_AJ_G0014946	pseudogene	ChrX:154184734-154185940 (-)
AKR/J	MGP_AKRJ_G0014887	pseudogene	ChrX:159031398-159032699 (-)
BALB/cJ	MGP_BALBcJ_G0014900	pseudogene	ChrX:152270748-152272049 (-)
C3H/HeJ	MGP_C3HHeJ_G0014738	pseudogene	ChrX:155250417-155251718 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0014807	pseudogene	ChrX:153195253-153196556 (-)
FVB/NJ	MGP_FVBNJ_G0014790	pseudogene	ChrX:152297325-152298883 (-)
LP/J	MGP_LPJ_G0014908	pseudogene	ChrX:156046265-156048121 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014834	pseudogene	ChrX:172562661-172563962 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015372	pseudogene	ChrX:154454533-154455958 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm15163
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000085711 (Evidence)
• NCBI Gene
  434885

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085711	Ensembl Gene Model | MGI Sequence Detail	1302	C57BL/6J
transcript	ENSMUST00000120749	Ensembl | MGI Sequence Detail	1302	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

Other
Accession IDs

MGI:3646588

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:157972 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). Database Download. 2010;

TSS for Gm15163:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr164452	ChrX:155800538-155800556 (-)	-21 bp