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Rtraf-ps Pseudogene Detail
Summary
  • Symbol
    Rtraf-ps
  • Name
    RNA transcription, translation and transport factor, pseudogene
  • Feature Type
    pseudogene
  • IDs
    MGI:3642446
    NCBI Gene: 545536
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr3:88483717-88484446 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 38.88 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    114 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3642446
 pseudogene Chr3:88483544-88484510 (-)
129S1/SvImJ MGP_129S1SvImJ_G0012263
 pseudogene Chr3:88745890-88746578 (-)
A/J MGP_AJ_G0012256
 pseudogene Chr3:85752501-85753230 (-)
AKR/J MGP_AKRJ_G0012224
 pseudogene Chr3:87866351-87867022 (-)
BALB/cJ MGP_BALBcJ_G0012239
 pseudogene Chr3:85837660-85838349 (-)
C3H/HeJ MGP_C3HHeJ_G0012108
 pseudogene Chr3:88124679-88127149 (-)
C57BL/6NJ MGP_C57BL6NJ_G0012552
 pseudogene Chr3:92049389-92050142 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0012320
 pseudogene Chr8:50388293-50389095 (-)
CAST/EiJ MGP_CASTEiJ_G0013531
 pseudogene Chr8:56512797-56513507 (-)
CBA/J MGP_CBAJ_G0012084
 pseudogene Chr3:95215129-95218129 (-)
DBA/2J MGP_DBA2J_G0012141
 pseudogene Chr3:85236101-85237426 (-)
FVB/NJ no annotation
LP/J MGP_LPJ_G0012211
 pseudogene Chr3:89758357-89759498 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0012146
 pseudogene Chr3:101425481-101426152 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0012557
 pseudogene Chr3:87614318-87615007 (-)
PWK/PhJ MGP_PWKPhJ_G0011728
 pseudogene Chr3:85015404-85016133 (-)
SPRET/EiJ MGP_SPRETEiJ_G0013123
 pseudogene Chr8:55578762-55579472 (-)
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    20
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000074479 Ensembl Gene Model | MGI Sequence Detail 730 C57BL/6J ±  kb
transcript ENSMUST00000098952 Ensembl | MGI Sequence Detail 730 Not Applicable  
For the selected sequence
Other
Accession IDs
less
MGI:6313712
References
more
  • Summaries
    All 9
    Phenotypes 5
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory