Rpl36-ps3 Pseudogene Detail

Summary

• Symbol
  Rpl36-ps3
• Name
  ribosomal protein L36, pseudogene 3
• Synonyms
  Gm10168

• Feature Type
  pseudogene
• IDs
  MGI:3642480
  NCBI Gene: 100043215
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:12962023-12962337 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 6.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642480	pseudogene	Chr12:12961988-12962386 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0019603	protein coding gene	Chr12:10142528-10142911 (+)
A/J	MGP_AJ_G0030080	protein coding gene	Chr5:123939098-123939500 (-)
AKR/J	MGP_AKRJ_G0019540	protein coding gene	Chr12:10415937-10416318 (+)
BALB/cJ	MGP_BALBcJ_G0019546	protein coding gene	Chr12:10004057-10004888 (+)
C3H/HeJ	MGP_C3HHeJ_G0019351	protein coding gene	Chr12:10221703-10222086 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0019994	protein coding gene	Chr12:10513022-10513405 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0019322	protein coding gene	Chr12:11226891-11227274 (+)
DBA/2J	MGP_DBA2J_G0019435	protein coding gene	Chr12:9778563-9778946 (+)
FVB/NJ	MGP_FVBNJ_G0019426	protein coding gene	Chr12:9680475-9680858 (+)
LP/J	MGP_LPJ_G0019506	protein coding gene	Chr12:10261220-10261603 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0019460	protein coding gene	Chr12:10986291-10986630 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0020033	protein coding gene	Chr12:10042974-10043352 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rpl36-ps3
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000066629 (Evidence)
• NCBI Gene
  100043215

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000066629	Ensembl Gene Model | MGI Sequence Detail	315	C57BL/6J
transcript	ENSMUST00000085720	Ensembl | MGI Sequence Detail	315	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;