Rpl36a-ps1 Pseudogene Detail

Summary

• Symbol
  Rpl36a-ps1
• Name
  ribosomal protein L36A, pseudogene 1
• Synonyms
  Gm10077

• Feature Type
  pseudogene
• IDs
  MGI:3642585
  NCBI Gene: 100043787
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:99231306-99231754 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 49.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642585	pseudogene	Chr14:99231306-99231785 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011142	pseudogene	Chr14:95258565-95258885 (-)
A/J	MGP_AJ_G0011135	pseudogene	Chr14:92226356-92227281 (-)
AKR/J	MGP_AKRJ_G0011095	pseudogene	Chr14:94928041-94928361 (-)
BALB/cJ	MGP_BALBcJ_G0011106	pseudogene	Chr14:92554633-92554953 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0011398	pseudogene	Chr14:99151248-99151568 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0010983	pseudogene	Chr14:102820064-102820384 (-)
DBA/2J	MGP_DBA2J_G0011029	pseudogene	Chr14:91721053-91721373 (-)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0011120	pseudogene	Chr14:96067317-96067637 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0011376	pseudogene	Chr14:94437255-94437575 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0013354	pseudogene	Chr7:10790582-10790903 (+)

Homology

• MGI Vertebrate Homology
  Rpl36a-ps1 stringent orthology
  1 mouse;1 rat;1 zebrafish
  
• Gene Tree
  Rpl36a-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Rpl36a-ps1
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000060377 (Evidence)
• NCBI Gene
  100043787

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000060377	Ensembl Gene Model | MGI Sequence Detail	449	C57BL/6J
transcript	ENSMUST00000081987	Ensembl | MGI Sequence Detail	449	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rpl36a-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr129999	Chr14:99231760-99231771 (-)	-12 bp