Gm9962 Gene Detail

Summary

• Symbol
  Gm9962
• Name
  predicted gene 9962

• Feature Type
  lncRNA gene
• IDs
  MGI:3642695
  NCBI Gene: 791383
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:57037020-57059689 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 33.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  831 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642695	lncRNA gene	Chr7:57037020-57059689 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004458	antisense lncRNA gene	Chr7:58204794-58227453 (+)
A/J	MGP_AJ_G0004437	antisense lncRNA gene	Chr7:57322826-57349684 (+)
AKR/J	MGP_AKRJ_G0004420	antisense lncRNA gene	Chr7:58649840-58672510 (+)
BALB/cJ	MGP_BALBcJ_G0004422	antisense lncRNA gene	Chr7:56908819-56931932 (+)
C3H/HeJ	MGP_C3HHeJ_G0004372	antisense lncRNA gene	Chr7:58996488-59019083 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004573	antisense lncRNA gene	Chr7:60838964-60863329 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004028	antisense lncRNA gene	Chr7:59894051-59916448 (+)
CAST/EiJ	MGP_CASTEiJ_G0004332	antisense lncRNA gene	Chr7:50172514-50195306 (+)
CBA/J	MGP_CBAJ_G0004366	antisense lncRNA gene	Chr7:62942519-62966232 (+)
DBA/2J	MGP_DBA2J_G0004380	antisense lncRNA gene	Chr7:56318121-56340473 (+)
FVB/NJ	MGP_FVBNJ_G0004398	antisense lncRNA gene	Chr7:56260618-56283355 (+)
LP/J	MGP_LPJ_G0004461	antisense lncRNA gene	Chr7:59316033-59343480 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004389	antisense lncRNA gene	Chr7:62527601-62550970 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004571	antisense lncRNA gene	Chr7:57648377-57672794 (+)
PWK/PhJ	MGP_PWKPhJ_G0004285	antisense lncRNA gene	Chr7:49535591-49558077 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004226	antisense lncRNA gene	Chr7:45688761-45712889 (+)
WSB/EiJ	MGP_WSBEiJ_G0004371	antisense lncRNA gene	Chr7:58253727-58277336 (+)

Homology

• Gene Tree
  Gm9962
  

Human Diseases

• References
  4 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  31 phenotype references
  

• All Mutations and Alleles
  3
• Radiation induced
  1
• Targeted
  1
• Transgenic
  1
• Genomic Mutations
  3 involving Gm9962
• Incidental Mutations
  APF
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000055048 (Evidence)
• NCBI Gene
  791383

Representative Sequences			Length	Strain/Species
genomic	791383	NCBI Gene Model | MGI Sequence Detail	22670	C57BL/6J
transcript	NR_033504	RefSeq | MGI Sequence Detail	1417	C57BL/6
polypeptide	Q8C7L6	UniProt | EBI | MGI Sequence Detail	107	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 39

  Diseases 4

  Phenotypes 31
• Earliest
  J:56614 Gabriel JM, et al., A transgene insertion creating a heritable chromosome deletion mouse model of Prader-Willi and angelman syndromes. Proc Natl Acad Sci U S A. 1999 Aug 3;96(16):9258-63
• Latest
  J:335224 Nakai N, et al., Virtual reality-based real-time imaging reveals abnormal cortical dynamics during behavioral transitions in a mouse model of autism. Cell Rep. 2023 Mar 24;:112258