9830004L10Rik Gene Detail

Summary

• Symbol
  9830004L10Rik
• Name
  RIKEN cDNA 9830004L10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3642808
  NCBI Gene: 100038658
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:80162436-80169790 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  378 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642808	lncRNA gene	Chr1:80162436-80169790 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004886	lincRNA gene	Chr1:80983865-80992516 (+)
A/J	MGP_AJ_G0004868	lincRNA gene	Chr1:78131375-78138025 (+)
AKR/J	MGP_AKRJ_G0004846	lincRNA gene	Chr1:80272051-80278352 (+)
BALB/cJ	MGP_BALBcJ_G0004849	lincRNA gene	Chr1:78214089-78222316 (+)
C3H/HeJ	MGP_C3HHeJ_G0004798	lincRNA gene	Chr1:80616090-80623394 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005000	lincRNA gene	Chr1:84128781-84136169 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0004751	lincRNA gene	Chr1:79984227-79990669 (+)
CBA/J	MGP_CBAJ_G0004791	lincRNA gene	Chr1:86813869-86821134 (+)
DBA/2J	MGP_DBA2J_G0004809	lincRNA gene	Chr1:77440477-77448312 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0004887	lincRNA gene	Chr1:82134319-82142498 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004813	lincRNA gene	Chr1:90079502-90088124 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005004	lincRNA gene	Chr1:80387465-80394827 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0004796	lincRNA gene	Chr1:80162947-80169711 (+)

Homology

• Gene Tree
  9830004L10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 9830004L10Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• UniProt
  1

• Ensembl
  ENSMUSG00000099552 (Evidence)
• NCBI Gene
  100038658

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099552	Ensembl Gene Model | MGI Sequence Detail	7355	C57BL/6J
transcript	ENSMUST00000185548	Ensembl | MGI Sequence Detail	2177	Not Applicable
polypeptide	Q3UVB0	UniProt | EBI | MGI Sequence Detail	88	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45