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Gm9828 Gene Detail
Summary
  • Symbol
    Gm9828
  • Name
    predicted gene 9828
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3642913
    NCBI Gene: 105246056
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:98453624-98460923 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 51.93 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    286 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3642913
 lncRNA gene Chr13:98452930-98463737 (+)
129S1/SvImJ MGP_129S1SvImJ_G0003209
 antisense lncRNA gene Chr13:100016365-100028740 (+)
A/J MGP_AJ_G0003185
 antisense lncRNA gene Chr13:96209260-96217741 (+)
AKR/J MGP_AKRJ_G0003167
 antisense lncRNA gene Chr13:99147011-99155987 (+)
BALB/cJ MGP_BALBcJ_G0003172
 antisense lncRNA gene Chr13:96913177-96921516 (+)
C3H/HeJ MGP_C3HHeJ_G0003128
 antisense lncRNA gene Chr13:98886160-98894683 (+)
C57BL/6NJ MGP_C57BL6NJ_G0003315
 antisense lncRNA gene Chr13:103035698-103043688 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002842
 antisense lncRNA gene Chr13:91958124-91966085 (+)
CAST/EiJ MGP_CASTEiJ_G0003094
 antisense lncRNA gene Chr13:98255174-98262993 (+)
CBA/J MGP_CBAJ_G0003125
 antisense lncRNA gene Chr13:107133990-107143468 (+)
DBA/2J MGP_DBA2J_G0003130
 antisense lncRNA gene Chr13:95983168-95991153 (+)
FVB/NJ MGP_FVBNJ_G0003148
 antisense lncRNA gene Chr13:94739099-94749305 (+)
LP/J MGP_LPJ_G0003206
 antisense lncRNA gene Chr13:100123396-100133561 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0003139
 antisense lncRNA gene Chr13:107447084-107456544 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0003316
 antisense lncRNA gene Chr13:98597611-98607415 (+)
PWK/PhJ MGP_PWKPhJ_G0003052
 antisense lncRNA gene Chr13:94789369-94797283 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002998
 antisense lncRNA gene Chr13:94875274-94882937 (+)
WSB/EiJ MGP_WSBEiJ_G0003128
 antisense lncRNA gene Chr13:99043590-99053393 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
less
  • All Sequences
    31
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 105246056 NCBI Gene Model | MGI Sequence Detail 7300 C57BL/6J ±  kb
transcript NR_137279 RefSeq | MGI Sequence Detail 918 ZRU/MplStud  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 2
References
more
  • Summaries
    All 12
    Phenotypes 2
  • Earliest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory