Gm6407 Pseudogene Detail

Summary

• Symbol
  Gm6407
• Name
  predicted gene 6407

• Feature Type
  pseudogene
• IDs
  MGI:3642965
  NCBI Gene: 623191
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:73526089-73526637 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 37.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  169 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642965	pseudogene	Chr10:73525929-73526846 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010530	pseudogene	Chr10:73786524-73787072 (-)
A/J	MGP_AJ_G0010523	pseudogene	Chr10:71263138-71263686 (-)
AKR/J	MGP_AKRJ_G0010483	pseudogene	Chr10:73161202-73161750 (-)
BALB/cJ	MGP_BALBcJ_G0010497	pseudogene	Chr10:71426969-71427517 (-)
C3H/HeJ	MGP_C3HHeJ_G0010421	pseudogene	Chr10:73204263-73204811 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010765	pseudogene	Chr10:76384265-76384813 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009434	pseudogene	Chr10:67593863-67594411 (-)
CAST/EiJ	MGP_CASTEiJ_G0010246	pseudogene	Chr10:73509034-73509582 (-)
CBA/J	MGP_CBAJ_G0010390	pseudogene	Chr10:79376339-79376887 (-)
DBA/2J	MGP_DBA2J_G0010423	pseudogene	Chr10:70574339-70574887 (-)
FVB/NJ	MGP_FVBNJ_G0010439	pseudogene	Chr10:69718490-69719038 (-)
LP/J	MGP_LPJ_G0010512	pseudogene	Chr10:74256566-74257114 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010410	pseudogene	Chr10:81497799-81498347 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010738	pseudogene	Chr10:73179828-73180376 (-)
PWK/PhJ	MGP_PWKPhJ_G0010145	pseudogene	Chr10:70378644-70379186 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009958	pseudogene	Chr10:72446695-72447234 (-)
WSB/EiJ	MGP_WSBEiJ_G0010309	pseudogene	Chr10:73160266-73160814 (-)

Homology

• Gene Tree
  Gm6407
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm6407
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000093548 (Evidence)
• NCBI Gene
  623191

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093548	Ensembl Gene Model | MGI Sequence Detail	549	C57BL/6J
transcript	ENSMUST00000176468	Ensembl | MGI Sequence Detail	549	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm6407:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98093	Chr10:73526840-73526843 (-)	-205 bp