Gm8093 Pseudogene Detail

Summary

• Symbol
  Gm8093
• Name
  predicted gene 8093

• Feature Type
  pseudogene
• IDs
  MGI:3642975
  NCBI Gene: 666419
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:78334789-78336680 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 43.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  177 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642975	pseudogene	Chr9:78334736-78337270 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039757	pseudogene	Chr9:78932503-78936875 (+)
A/J	MGP_AJ_G0039756	pseudogene	Chr9:76207819-76210991 (+)
AKR/J	MGP_AKRJ_G0039681	pseudogene	Chr9:78011921-78015146 (+)
BALB/cJ	MGP_BALBcJ_G0039725	pseudogene	Chr9:75868488-75871714 (+)
C3H/HeJ	MGP_C3HHeJ_G0039384	pseudogene	Chr9:78532166-78535392 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040286	pseudogene	Chr9:81054760-81059559 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036892	pseudogene	Chr5:131007670-131011713 (-)
CAST/EiJ	MGP_CASTEiJ_G0038505	pseudogene	Chr9:78811606-78817030 (+)
CBA/J	MGP_CBAJ_G0039357	pseudogene	Chr9:83923314-83929005 (+)
DBA/2J	MGP_DBA2J_G0039553	pseudogene	Chr9:75848797-75852370 (+)
FVB/NJ	MGP_FVBNJ_G0039511	pseudogene	Chr9:75079204-75082390 (+)
LP/J	MGP_LPJ_G0039592	pseudogene	Chr9:79160199-79164570 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039511	pseudogene	Chr9:85108792-85112872 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040393	pseudogene	Chr9:78179571-78183375 (+)
PWK/PhJ	MGP_PWKPhJ_G0038180	pseudogene	Chr9:76043328-76046855 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037926	pseudogene	Chr9:78378079-78382596 (+)
WSB/EiJ	MGP_WSBEiJ_G0038739	pseudogene	Chr9:78123643-78128057 (+)

Homology

• Gene Tree
  Gm8093
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm8093
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000087052 (Evidence)
• NCBI Gene
  666419

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087052	Ensembl Gene Model | MGI Sequence Detail	1892	C57BL/6J
transcript	ENSMUST00000128935	Ensembl | MGI Sequence Detail	1892	Not Applicable

References

• Summaries
  All 11

  Phenotypes 7
• Earliest
  J:12013 Russell LB, Definition of functional units in a small chromosomal segment of the mouse and its use in interpreting the nature of radiation-induced mutations. Mutat Res. 1971 Jan;11(1):107-23
• Latest
  J:29898 Avraham KB, et al., The mouse Snell's waltzer deafness gene encodes an unconventional myosin required for structural integrity of inner ear hair cells. Nat Genet. 1995 Dec;11(4):369-75

TSS for Gm8093:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86285	Chr9:78334968-78334989 (+)	190 bp
Tssr86286	Chr9:78336342-78336358 (+)	1,561 bp