Sox5os5 Gene Detail

Summary

• Symbol
  Sox5os5
• Name
  SRY (sex determining region Y)-box 5, opposite strand 5
• Synonyms
  Gm7518

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3643003
  NCBI Gene: 665149
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:144669291-144670633 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 77.03 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  48 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643003	antisense lncRNA gene	Chr6:144669291-144670633 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004390	antisense lncRNA gene	Chr6:149672819-149674161 (+)
A/J	MGP_AJ_G0004367	antisense lncRNA gene	Chr6:143761258-143762600 (+)
AKR/J	MGP_AKRJ_G0004349	antisense lncRNA gene	Chr6:148049566-148050903 (+)
BALB/cJ	MGP_BALBcJ_G0004353	antisense lncRNA gene	Chr6:143522127-143523469 (+)
C3H/HeJ	MGP_C3HHeJ_G0004302	antisense lncRNA gene	Chr6:148067716-148069053 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004503	antisense lncRNA gene	Chr6:153710519-153711861 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003963	antisense lncRNA gene	Chr6:142516935-142518272 (+)
CAST/EiJ	MGP_CASTEiJ_G0004262	antisense lncRNA gene	Chr6:147681293-147682630 (+)
CBA/J	MGP_CBAJ_G0004296	antisense lncRNA gene	Chr6:159565790-159567131 (+)
DBA/2J	MGP_DBA2J_G0004311	antisense lncRNA gene	Chr6:142561857-142563194 (+)
FVB/NJ	MGP_FVBNJ_G0004328	antisense lncRNA gene	Chr6:141303501-141304842 (+)
LP/J	MGP_LPJ_G0004390	antisense lncRNA gene	Chr6:149769967-149771308 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004319	antisense lncRNA gene	Chr6:163385816-163387157 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004500	antisense lncRNA gene	Chr6:147878294-147879631 (+)
PWK/PhJ	MGP_PWKPhJ_G0004215	antisense lncRNA gene	Chr6:141064041-141065385 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004157	antisense lncRNA gene	Chr6:146026929-146028260 (+)
WSB/EiJ	MGP_WSBEiJ_G0004301	antisense lncRNA gene	Chr6:148462805-148464146 (+)

Homology

• Gene Tree
  Sox5os5
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000086731 (Evidence)
• NCBI Gene
  665149

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086731	Ensembl Gene Model | MGI Sequence Detail	1343	C57BL/6J
transcript	ENSMUST00000152192	Ensembl | MGI Sequence Detail	207	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;