Rps15a-ps1 Pseudogene Detail

Summary

• Symbol
  Rps15a-ps1
• Name
  ribosomal protein S15A, pseudogene 1
• Synonyms
  Gm7263

• Feature Type
  pseudogene
• IDs
  MGI:3643034
  NCBI Gene: 639162
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:106028239-106028631 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 55.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643034	pseudogene	Chr10:106028203-106028648 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010545	pseudogene	Chr10:108289484-108289876 (-)
A/J	MGP_AJ_G0010539	pseudogene	Chr10:104285667-104286059 (-)
AKR/J	MGP_AKRJ_G0010499	pseudogene	Chr10:107336484-107336876 (-)
BALB/cJ	MGP_BALBcJ_G0010513	pseudogene	Chr10:104678233-104678625 (-)
C3H/HeJ	MGP_C3HHeJ_G0010436	pseudogene	Chr10:107400076-107400468 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010780	pseudogene	Chr10:112084892-112085284 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0010260	pseudogene	Chr10:107497718-107498110 (-)
CBA/J	MGP_CBAJ_G0010406	pseudogene	Chr10:116423062-116423454 (-)
DBA/2J	MGP_DBA2J_G0010437	pseudogene	Chr10:103410571-103410963 (-)
FVB/NJ	MGP_FVBNJ_G0010455	pseudogene	Chr10:102459424-102459816 (-)
LP/J	MGP_LPJ_G0010527	pseudogene	Chr10:108950330-108950722 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010432	pseudogene	Chr10:118745103-118745495 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010756	pseudogene	Chr10:107295416-107295808 (-)
PWK/PhJ	MGP_PWKPhJ_G0010161	pseudogene	Chr10:103471440-103471832 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009973	pseudogene	Chr10:106074387-106074779 (-)
WSB/EiJ	MGP_WSBEiJ_G0010325	pseudogene	Chr10:107413483-107413875 (-)

Homology

• Gene Tree
  Rps15a-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Rps15a-ps1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000056877 (Evidence)
• NCBI Gene
  639162

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000056877	Ensembl Gene Model | MGI Sequence Detail	393	C57BL/6J
transcript	ENSMUST00000071120	Ensembl | MGI Sequence Detail	393	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Rps15a-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr99181	Chr10:106028660-106028662 (-)	-30 bp