Gm6801 Pseudogene Detail

Summary

• Symbol
  Gm6801
• Name
  predicted gene 6801

• Feature Type
  pseudogene
• IDs
  MGI:3643101
  NCBI Gene: 627866
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:53429574-53431744 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 26.99 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  241 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643101	pseudogene	Chr1:53429573-53431943 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039885	pseudogene	Chr1:52954893-52959022 (+)
A/J	MGP_AJ_G0039891	pseudogene	Chr1:51158538-51161269 (+)
AKR/J	MGP_AKRJ_G0039814	pseudogene	Chr1:52275536-52277552 (+)
BALB/cJ	MGP_BALBcJ_G0039871	pseudogene	Chr1:51001989-51004663 (+)
C3H/HeJ	MGP_C3HHeJ_G0039515	pseudogene	Chr1:52649438-52651928 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040435	pseudogene	Chr1:55108760-55111315 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037022	pseudogene	Chr1:46717029-46719404 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0039480	pseudogene	Chr1:56629684-56631854 (+)
DBA/2J	MGP_DBA2J_G0039687	pseudogene	Chr1:50425446-50427616 (+)
FVB/NJ	MGP_FVBNJ_G0039648	pseudogene	Chr1:49877521-49879685 (+)
LP/J	MGP_LPJ_G0039720	pseudogene	Chr1:53384651-53386821 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0040533	pseudogene	Chr1:52391303-52393479 (+)
PWK/PhJ	MGP_PWKPhJ_G0038311	pseudogene	Chr1:43780651-43798533 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6801
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm6801
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000100069 (Evidence)
• NCBI Gene
  627866

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100069	Ensembl Gene Model | MGI Sequence Detail	2171	C57BL/6J
transcript	ENSMUST00000190697	Ensembl | MGI Sequence Detail	339	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45