Gm7781 Pseudogene Detail

Summary

• Symbol
  Gm7781
• Name
  predicted gene 7781

• Feature Type
  pseudogene
• IDs
  MGI:3643104
  NCBI Gene: 665773
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:129425386-129426173 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 53.17 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643104	pseudogene	ChrX:129404100-129426173 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014811	pseudogene	ChrX:127622419-127623206 (+)
A/J	MGP_AJ_G0014808	pseudogene	ChrX:127026098-127026885 (+)
AKR/J	MGP_AKRJ_G0014744	pseudogene	ChrX:131124963-131125750 (+)
BALB/cJ	MGP_BALBcJ_G0014761	pseudogene	ChrX:125493332-125494981 (+)
C3H/HeJ	MGP_C3HHeJ_G0014592	pseudogene	ChrX:127675309-127676096 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015247	pseudogene	ChrX:131375200-131376697 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012900	pseudogene	ChrX:119455967-119456750 (+)
CAST/EiJ	MGP_CASTEiJ_G0014211	pseudogene	ChrX:108673752-108674539 (+)
CBA/J	MGP_CBAJ_G0014585	pseudogene	ChrX:135227309-135228990 (+)
DBA/2J	MGP_DBA2J_G0014671	pseudogene	ChrX:126404565-126405352 (+)
FVB/NJ	MGP_FVBNJ_G0014649	pseudogene	ChrX:125730041-125731340 (+)
LP/J	MGP_LPJ_G0014765	pseudogene	ChrX:128455018-128455805 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014697	pseudogene	ChrX:142189786-142190573 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015222	pseudogene	ChrX:127039923-127040710 (+)
PWK/PhJ	MGP_PWKPhJ_G0014013	pseudogene	ChrX:105672266-105673054 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013805	pseudogene	ChrX:109212555-109213343 (+)
WSB/EiJ	MGP_WSBEiJ_G0014292	pseudogene	ChrX:125506003-125506790 (+)

Homology

• Gene Tree
  Gm7781
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000081456 (Evidence)
• NCBI Gene
  665773

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081456	Ensembl Gene Model | MGI Sequence Detail	788	C57BL/6J
transcript	ENSMUST00000117258	Ensembl | MGI Sequence Detail	788	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm7781:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161976	ChrX:129425316-129425343 (+)	-56 bp