Gm5819 Pseudogene Detail

Summary

• Symbol
  Gm5819
• Name
  predicted gene 5819

• Feature Type
  pseudogene
• IDs
  MGI:3643122
  NCBI Gene: 101055995
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr18:8694099-8694537 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 4.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  47 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643122	pseudogene	Chr18:8693958-8697114 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0023344	protein coding gene	Chr17:24272785-24281875 (+)
A/J	MGP_AJ_G0023303	protein coding gene	Chr17:23593719-23603529 (+)
AKR/J	MGP_AKRJ_G0023269	protein coding gene	Chr17:23684139-23693229 (+)
BALB/cJ	MGP_BALBcJ_G0023308	protein coding gene	Chr17:23791154-23800244 (+)
C3H/HeJ	MGP_C3HHeJ_G0023068	protein coding gene	Chr17:24060735-24069825 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0021226	protein coding gene	Chr17:21055418-21064838 (+)
CAST/EiJ	MGP_CASTEiJ_G0022570	protein coding gene	Chr17:23907296-23918598 (+)
CBA/J	MGP_CBAJ_G0023043	protein coding gene	Chr17:26199686-26208776 (+)
DBA/2J	MGP_DBA2J_G0023173	protein coding gene	Chr17:23179734-23188947 (+)
FVB/NJ	MGP_FVBNJ_G0023143	protein coding gene	Chr17:22906950-22917483 (+)
LP/J	MGP_LPJ_G0023250	protein coding gene	Chr17:24566052-24575142 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0023162	protein coding gene	Chr17:25859008-25869809 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0023790	protein coding gene	Chr17:23968685-23980991 (+)
PWK/PhJ	MGP_PWKPhJ_G0022319	protein coding gene	Chr17:21942570-21951732 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0022137	protein coding gene	Chr17:22040920-22049999 (+)
WSB/EiJ	MGP_WSBEiJ_G0022633	protein coding gene	Chr17:24045886-24055251 (+)

Homology

• Gene Tree
  Gm5819
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000092097 (Evidence)
• NCBI Gene
  101055995

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092097	Ensembl Gene Model | MGI Sequence Detail	439	C57BL/6J
transcript	ENSMUST00000171469	Ensembl | MGI Sequence Detail	439	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;