Lgalsl2 Gene Detail

Summary

• Symbol
  Lgalsl2
• Name
  galectin like 2
• Synonyms
  Gm5065

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3643170
  NCBI Gene: 272350
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:5353541-5363681 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 3.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  353 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643170	protein coding gene	Chr7:5353536-5363681 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0031591	protein coding gene	Chr7:2357582-2368181 (+)
A/J	MGP_AJ_G0031563	protein coding gene	Chr7:2304608-2314744 (+)
AKR/J	MGP_AKRJ_G0031492	protein coding gene	Chr7:2405445-2415356 (+)
BALB/cJ	MGP_BALBcJ_G0031571	protein coding gene	Chr7:2382753-2393472 (+)
C3H/HeJ	MGP_C3HHeJ_G0031292	protein coding gene	Chr7:2361840-2372015 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0032033	protein coding gene	Chr7:2394959-2403668 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0029850	protein coding gene	Chr7:70293079-70294396 (+)
CAST/EiJ	MGP_CASTEiJ_G0030655	protein coding gene	Chr7:2279274-2289904 (+)
CBA/J	MGP_CBAJ_G0031250	protein coding gene	Chr7:2622768-2631791 (+)
DBA/2J	MGP_DBA2J_G0031409	protein coding gene	Chr7:2326809-2336481 (+)
FVB/NJ	MGP_FVBNJ_G0031361	protein coding gene	Chr7:2247993-2264635 (+)
LP/J	MGP_LPJ_G0031494	protein coding gene	Chr7:2430251-2441693 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0031400	protein coding gene	Chr7:2605346-2618632 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0032063	protein coding gene	Chr7:2308782-2317444 (+)
PWK/PhJ	MGP_PWKPhJ_G0030385	protein coding gene	Chr7:2416868-2426765 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0030210	protein coding gene	Chr7:2305317-2315307 (+)
WSB/EiJ	MGP_WSBEiJ_G0030752	protein coding gene	Chr7:2336589-2347036 (+)

Homology

• Human Ortholog
  LGALSL, galectin like

• Vertebrate Orthologs
  3

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  LGALSL, galectin like
  
• Synonyms
  GRP, HSPC159
• Links
  HGNC:25012

  NCBI Gene ID: 29094

  neXtProt AC: NX_Q3ZCW2

  UniProt: Q3ZCW2

  
  
• Chr Location
  2p14; chr2:64453969-64461381 (+)  GRCh38

---

• MGI Vertebrate Homology
  Lgalsl2 stringent orthology
  1 human;1 mouse;1 rat;1 zebrafish
  
• HCOP
  vertebrate homology predictions: LGALSL
• Gene Tree
  Lgalsl2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  16 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  2
• GO References
  2

Expression

• Assay Results
  706
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000048398 (Evidence)
• NCBI Gene
  272350

Representative Sequences			Length	Strain/Species
genomic	272350	NCBI Gene Model | MGI Sequence Detail	10141	C57BL/6J
transcript	NR_003622	RefSeq | MGI Sequence Detail	1448	Not Specified
polypeptide	Q7TPX9	UniProt | EBI | MGI Sequence Detail	165	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• Protein Ontology
  PR:000008384 galectin-like protein 2
  (term hierarchy)
• InterPro Domains
  IPR013320 Concanavalin A-like lectin/glucanase domain superfamily
  IPR001079 Galectin, carbohydrate recognition domain
  IPR044156 Galectin-like

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:7466663

References

• Summaries
  All 16

  Gene Ontology 2

  Phenotypes 3
• Earliest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42