Gm4744 Pseudogene Detail

Summary

• Symbol
  Gm4744
• Name
  predicted gene 4744

• Feature Type
  pseudogene
• IDs
  MGI:3643181
  NCBI Gene: 194360
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:40925396-40931286 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 19.00 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  200 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643181	pseudogene	Chr6:40925396-40931287 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0030620	protein coding gene	Chr6:39417459-39421150 (-)
A/J	MGP_AJ_G0030593	protein coding gene	Chr6:37697060-37700555 (-)
AKR/J	MGP_AKRJ_G0030520	protein coding gene	Chr6:38903694-38907189 (-)
BALB/cJ	MGP_BALBcJ_G0030603	protein coding gene	Chr6:37913254-37916749 (-)
C3H/HeJ	MGP_C3HHeJ_G0030316	protein coding gene	Chr6:38912186-38915681 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0031057	protein coding gene	Chr6:40413149-40416840 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0028269	protein coding gene	Chr6:35528746-35530813 (-)
CAST/EiJ	MGP_CASTEiJ_G0029718	protein coding gene	Chr6:38828651-38832158 (-)
CBA/J	MGP_CBAJ_G0030294	protein coding gene	Chr6:42041798-42045293 (-)
DBA/2J	MGP_DBA2J_G0030438	protein coding gene	Chr6:37514555-37518050 (-)
FVB/NJ	MGP_FVBNJ_G0030392	protein coding gene	Chr6:37285149-37288656 (-)
LP/J	MGP_LPJ_G0030525	protein coding gene	Chr6:39438160-39441655 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0030428	protein coding gene	Chr6:44276197-44279692 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0031087	protein coding gene	Chr6:38856022-38859517 (-)
PWK/PhJ	MGP_PWKPhJ_G0029432	protein coding gene	Chr6:37166663-37170279 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0029268	protein coding gene	Chr6:38590013-38597679 (-)
WSB/EiJ	MGP_WSBEiJ_G0029794	protein coding gene	Chr6:38807194-38810691 (-)

Homology

• Gene Tree
  Gm4744
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000063252 (Evidence)
• NCBI Gene
  194360

Representative Sequences			Length	Strain/Species
genomic	194360	NCBI Gene Model | MGI Sequence Detail	5891	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm4744:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr60531	Chr6:40931311-40931319 (-)	-29 bp