Gm7507 Pseudogene Detail

Summary

• Symbol
  Gm7507
• Name
  predicted gene 7507

• Feature Type
  pseudogene
• IDs
  MGI:3643248
  NCBI Gene: 665129
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:84789222-84790229 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 36.92 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643248	pseudogene	Chr6:84789204-84790432 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013578	pseudogene	Chr6:85915521-85917874 (+)
A/J	MGP_AJ_G0013558	pseudogene	Chr6:82625796-82626803 (+)
AKR/J	MGP_AKRJ_G0013520	pseudogene	Chr6:85025494-85026501 (+)
BALB/cJ	MGP_BALBcJ_G0013538	pseudogene	Chr6:82650803-82651810 (+)
C3H/HeJ	MGP_C3HHeJ_G0013397	pseudogene	Chr6:99404995-99406002 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013926	pseudogene	Chr6:88258315-88263552 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0013358	pseudogene	Chr6:91754772-91755779 (+)
DBA/2J	MGP_DBA2J_G0013438	pseudogene	Chr6:81935425-81936432 (+)
FVB/NJ	MGP_FVBNJ_G0013438	pseudogene	Chr6:81147660-81149106 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0013450	pseudogene	Chr6:95965970-95966951 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013917	pseudogene	Chr6:84844869-84845876 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm7507
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm7507
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000098142 (Evidence)
• NCBI Gene
  665129

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098142	Ensembl Gene Model | MGI Sequence Detail	1008	C57BL/6J
transcript	ENSMUST00000183053	Ensembl | MGI Sequence Detail	1008	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48

TSS for Gm7507:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57405	Chr6:84789145-84789147 (+)	-76 bp