Gm5436 Pseudogene Detail

Summary

• Symbol
  Gm5436
• Name
  predicted pseudogene 5436

• Feature Type
  pseudogene
• IDs
  MGI:3643291
  NCBI Gene: 432676
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:84305105-84305747 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 39.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  139 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643291	pseudogene	Chr12:84305051-84305763 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010928	pseudogene	Chr12:84953927-84954568 (-)
A/J	MGP_AJ_G0010935	pseudogene	Chr12:81737685-81738422 (-)
AKR/J	MGP_AKRJ_G0010888	pseudogene	Chr12:83947457-83948330 (-)
BALB/cJ	MGP_BALBcJ_G0010908	pseudogene	Chr12:82068942-82069583 (-)
C3H/HeJ	MGP_C3HHeJ_G0010804	pseudogene	Chr12:84423405-84424046 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011179	pseudogene	Chr12:87391280-87391921 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0010779	pseudogene	Chr12:90759910-90760551 (-)
DBA/2J	MGP_DBA2J_G0010826	pseudogene	Chr12:81271509-81272150 (-)
FVB/NJ	MGP_FVBNJ_G0010839	pseudogene	Chr12:80224112-80224753 (-)
LP/J	MGP_LPJ_G0010910	pseudogene	Chr12:84829161-84829802 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010820	pseudogene	Chr12:93689814-93690455 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011164	pseudogene	Chr12:83548500-83549141 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0010339	pseudogene	Chr12:78031953-78032589 (-)
WSB/EiJ	MGP_WSBEiJ_G0010681	pseudogene	Chr12:84261958-84262599 (-)

Homology

• Gene Tree
  Gm5436
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5436
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000042962 (Evidence)
• NCBI Gene
  432676

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000042962	Ensembl Gene Model | MGI Sequence Detail	643	C57BL/6J
transcript	ENSMUST00000058103	Ensembl | MGI Sequence Detail	643	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;