Gm5435 Pseudogene Detail

Summary

• Symbol
  Gm5435
• Name
  predicted gene 5435

• Feature Type
  pseudogene
• IDs
  MGI:3643292
  NCBI Gene: 432675
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:82542194-82543311 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 38.14 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643292	pseudogene	Chr12:82542162-82543311 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0019910	protein coding gene	Chr12:83045009-83046295 (-)
A/J	MGP_AJ_G0019867	protein coding gene	Chr12:79932248-79933366 (-)
AKR/J	MGP_AKRJ_G0019843	protein coding gene	Chr12:82089824-82090942 (-)
BALB/cJ	MGP_BALBcJ_G0019847	protein coding gene	Chr12:80269332-80270755 (-)
C3H/HeJ	MGP_C3HHeJ_G0019653	protein coding gene	Chr12:82557215-82558333 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0020299	protein coding gene	Chr12:85445488-85446606 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0017916	protein coding gene	Chr12:76905530-76906783 (-)
CAST/EiJ	MGP_CASTEiJ_G0019202	protein coding gene	Chr12:77481607-77482784 (-)
CBA/J	MGP_CBAJ_G0019624	protein coding gene	Chr12:88695868-88696986 (-)
DBA/2J	MGP_DBA2J_G0019739	protein coding gene	Chr12:79504585-79505703 (-)
FVB/NJ	MGP_FVBNJ_G0019725	protein coding gene	Chr12:78424250-78425368 (-)
LP/J	MGP_LPJ_G0019811	protein coding gene	Chr12:82945991-82947127 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0019764	protein coding gene	Chr12:91766426-91767544 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0020333	protein coding gene	Chr12:81676416-81677534 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0018761	protein coding gene	Chr12:76164585-76168174 (-)
WSB/EiJ	MGP_WSBEiJ_G0019254	protein coding gene	Chr12:82334642-82338184 (-)

Homology

• Gene Tree
  Gm5435
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5435
• Incidental Mutations
  APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000094374 (Evidence)
• NCBI Gene
  432675

Representative Sequences			Length	Strain/Species
genomic	432675	NCBI Gene Model | MGI Sequence Detail	1118	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;