Gm5422 Pseudogene Detail

Summary

• Symbol
  Gm5422
• Name
  predicted pseudogene 5422

• Feature Type
  pseudogene
• IDs
  MGI:3643411
  NCBI Gene: 432448
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr10:31124151-31126871 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 17.31 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  209 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643411	pseudogene	Chr10:31124133-31127039 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0017120	protein coding gene	Chr10:29483035-29485940 (+)
A/J	MGP_AJ_G0017097	protein coding gene	Chr10:28612141-28616481 (+)
AKR/J	MGP_AKRJ_G0017057	protein coding gene	Chr10:29068036-29070941 (+)
BALB/cJ	MGP_BALBcJ_G0017060	protein coding gene	Chr10:28686671-28689576 (+)
C3H/HeJ	MGP_C3HHeJ_G0016880	protein coding gene	Chr10:29336917-29339831 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0017518	protein coding gene	Chr10:30372903-30375808 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020585	protein coding gene	Chr16:17814719-17826937 (+)
CAST/EiJ	MGP_CASTEiJ_G0016459	protein coding gene	Chr10:29401357-29407024 (+)
CBA/J	MGP_CBAJ_G0016854	protein coding gene	Chr10:31815958-31820687 (+)
DBA/2J	MGP_DBA2J_G0016959	protein coding gene	Chr10:28294175-28297952 (+)
FVB/NJ	MGP_FVBNJ_G0016954	protein coding gene	Chr10:27879928-27882833 (+)
LP/J	MGP_LPJ_G0017036	protein coding gene	Chr10:29477696-29480601 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0016984	protein coding gene	Chr10:31984145-31987056 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0017554	protein coding gene	Chr10:28971481-28974386 (+)
PWK/PhJ	MGP_PWKPhJ_G0016241	protein coding gene	Chr10:28057970-28060821 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0021482	protein coding gene	Chr16:17545667-17554344 (+)
WSB/EiJ	MGP_WSBEiJ_G0016522	protein coding gene	Chr10:29120144-29122062 (+)

Homology

• Gene Tree
  Gm5422
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5422
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  22 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000039684 (Evidence)
• NCBI Gene
  432448

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000039684	Ensembl Gene Model | MGI Sequence Detail	2721	C57BL/6J
transcript	ENSMUST00000050717	Ensembl | MGI Sequence Detail	2721	Not Applicable

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87