Gm4973 Pseudogene Detail

Summary

• Symbol
  Gm4973
• Name
  predicted gene 4973

• Feature Type
  pseudogene
• IDs
  MGI:3643455
  NCBI Gene: 244214
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:125146441-125147771 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 68.93 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  190 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643455	pseudogene	Chr7:125146441-125147774 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014005	pseudogene	Chr7:129758201-129759534 (+)
A/J	MGP_AJ_G0014024	pseudogene	Chr7:126360002-126361335 (+)
AKR/J	MGP_AKRJ_G0013958	pseudogene	Chr7:129555147-129556464 (+)
BALB/cJ	MGP_BALBcJ_G0013981	pseudogene	Chr7:126008963-126010280 (+)
C3H/HeJ	MGP_C3HHeJ_G0013816	pseudogene	Chr7:129471893-129473226 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014413	pseudogene	Chr7:134840111-134841444 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012269	pseudogene	Chr7:127561847-127563143 (+)
CAST/EiJ	MGP_CASTEiJ_G0013471	pseudogene	Chr7:121260307-121261640 (+)
CBA/J	MGP_CBAJ_G0013796	pseudogene	Chr7:139360591-139361924 (+)
DBA/2J	MGP_DBA2J_G0013873	pseudogene	Chr7:124334877-124336210 (+)
FVB/NJ	MGP_FVBNJ_G0013874	pseudogene	Chr7:124169962-124171295 (+)
LP/J	MGP_LPJ_G0013952	pseudogene	Chr7:131232465-131233798 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013900	pseudogene	Chr7:140605636-140606969 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014379	pseudogene	Chr7:128553222-128554555 (+)
PWK/PhJ	MGP_PWKPhJ_G0013286	pseudogene	Chr7:117315359-117316807 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013056	pseudogene	Chr7:115379121-115380454 (+)
WSB/EiJ	MGP_WSBEiJ_G0013533	pseudogene	Chr7:129522944-129524277 (+)

Homology

• Gene Tree
  Gm4973
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000108615 (Evidence)
• NCBI Gene
  244214

Representative Sequences			Length	Strain/Species
genomic	244214	NCBI Gene Model | MGI Sequence Detail	1331	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm4973:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68977	Chr7:125147543-125147570 (+)	1,116 bp