Gm5766 Pseudogene Detail

Summary

• Symbol
  Gm5766
• Name
  predicted gene 5766

• Feature Type
  pseudogene
• IDs
  MGI:3643508
  NCBI Gene: 436332
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr16:4048165-4048963 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 2.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  145 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643508	pseudogene	Chr16:4047093-4049069 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039672	pseudogene	Chr16:695448-699159 (+)
A/J	MGP_AJ_G0039671	pseudogene	Chr16:560798-563302 (+)
AKR/J	MGP_AKRJ_G0039596	pseudogene	Chr16:702010-705609 (+)
BALB/cJ	MGP_BALBcJ_G0039644	pseudogene	Chr16:695135-700264 (+)
C3H/HeJ	MGP_C3HHeJ_G0039306	pseudogene	Chr16:742227-745006 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040199	pseudogene	Chr16:754299-758403 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036841	pseudogene	Chr16:504873-506877 (+)
CAST/EiJ	MGP_CASTEiJ_G0038427	pseudogene	Chr16:714612-716515 (+)
CBA/J	MGP_CBAJ_G0039275	pseudogene	Chr16:832385-834351 (+)
DBA/2J	MGP_DBA2J_G0039468	pseudogene	Chr16:664092-666061 (+)
FVB/NJ	MGP_FVBNJ_G0039424	pseudogene	Chr16:637190-639124 (+)
LP/J	MGP_LPJ_G0039509	pseudogene	Chr16:702801-704774 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039429	pseudogene	Chr16:705686-707663 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040304	pseudogene	Chr16:680667-683331 (+)
PWK/PhJ	MGP_PWKPhJ_G0038101	pseudogene	Chr16:710936-713044 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037851	pseudogene	Chr16:775870-777838 (+)
WSB/EiJ	MGP_WSBEiJ_G0038660	pseudogene	Chr16:705089-706949 (+)

Homology

• Gene Tree
  Gm5766
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000089645 (Evidence)
• NCBI Gene
  436332

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089645	Ensembl Gene Model | MGI Sequence Detail	799	C57BL/6J
transcript	ENSMUST00000161633	Ensembl | MGI Sequence Detail	799	Not Applicable
polypeptide	Q8CDE3	UniProt | EBI | MGI Sequence Detail	206	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR050257 Eukaryotic ribosomal RNA-processing and assembly protein
  IPR001921 Large ribosomal subunit protein eL8
  IPR004037 Large ribosomal subunit protein eL8-like, conserved site
  IPR029064 Ribosomal protein eL30-like superfamily
  IPR004038 Ribosomal protein eL8/eL30/eS12/Gadd45
  IPR018492 Ribosomal protein eL8/Nhp2 family

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;