Gm10319 Pseudogene Detail

Summary

• Symbol
  Gm10319
• Name
  predicted pseudogene 10319
• Synonyms
  EG381806

• Feature Type
  pseudogene
• IDs
  MGI:3643520
  NCBI Gene: 381806
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:122113587-122127917 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 57.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  261 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643520	pseudogene	Chr6:122113587-122128975 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039834	pseudogene	Chr6:124699291-124844321 (+)
A/J	MGP_AJ_G0039836	pseudogene	Chr6:120047001-120512341 (+)
AKR/J	MGP_AKRJ_G0039762	pseudogene	Chr6:123808233-123824190 (+)
BALB/cJ	MGP_BALBcJ_G0039808	pseudogene	Chr6:119958604-119970892 (+)
C3H/HeJ	MGP_C3HHeJ_G0039462	pseudogene	Chr6:123312363-123766551 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040378	pseudogene	Chr6:128321138-128340751 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0039589	pseudogene	Chr6:118012722-118387160 (+)
LP/J	MGP_LPJ_G0039669	pseudogene	Chr6:125122261-125136104 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039589	pseudogene	Chr6:137261108-137538924 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040479	pseudogene	Chr6:123682497-123704787 (+)
PWK/PhJ	MGP_PWKPhJ_G0038249	pseudogene	Chr6:118056409-118069816 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm10319
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  2

• Ensembl
  ENSMUSG00000071204 (Evidence)
• NCBI Gene
  381806

Representative Sequences			Length	Strain/Species
genomic	381806	NCBI Gene Model | MGI Sequence Detail	14331	C57BL/6J
transcript	NR_003624	RefSeq | MGI Sequence Detail	1350	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Gm10319:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58651	Chr6:122113587-122113597 (+)	5 bp