Gm6793 Pseudogene Detail

Summary

• Symbol
  Gm6793
• Name
  predicted gene 6793

• Feature Type
  pseudogene
• IDs
  MGI:3643578
  NCBI Gene: 627828
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:112740585-112741640 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 58.30 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  3

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643578	pseudogene	Chr8:112740065-112741668 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	MGP_AKRJ_G0026951	protein coding gene	Chr2:185457408-185462683 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0017694	protein coding gene	Chr10:58535961-58554423 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6793
  

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000092086 (Evidence)
• NCBI Gene
  627828

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092086	Ensembl Gene Model | MGI Sequence Detail	1056	C57BL/6J
transcript	ENSMUST00000071732	Ensembl | MGI Sequence Detail	1056	Not Applicable
polypeptide	B2RXM2	UniProt | EBI | MGI Sequence Detail	351	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR034516 hnRNP A1/3, RNA recognition motif 2
  IPR034513 hnRNP A3, RNA recognition motif 1
  IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
  IPR035979 RNA-binding domain superfamily
  IPR000504 RNA recognition motif domain

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;