Rps27a-ps2 Pseudogene Detail

Summary

• Symbol
  Rps27a-ps2
• Name
  ribosomal protein S27A, pseudogene 2
• Synonyms
  Gm6111

• Feature Type
  pseudogene
• IDs
  MGI:3643614
  NCBI Gene: 619900
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:83291713-83292179 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 45.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643614	pseudogene	Chr9:83291675-83292217 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0012876	pseudogene	Chr4:128700066-128700532 (-)
AKR/J	MGP_AKRJ_G0012847	pseudogene	Chr4:132306599-132307065 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0012712	pseudogene	Chr4:132557906-132558592 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011357	pseudogene	Chr14:41241044-41241510 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012265	pseudogene	Chr7:124974467-124974933 (+)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0012750	pseudogene	Chr4:129126593-129127059 (-)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0012767	pseudogene	Chr4:147285394-147285860 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013210	pseudogene	Chr4:132712299-132714566 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0012955	pseudogene	Chr7:39746310-39746776 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rps27a-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Rps27a-ps2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  1

• Ensembl
  ENSMUSG00000058838 (Evidence)
• NCBI Gene
  619900

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000058838	Ensembl Gene Model | MGI Sequence Detail	467	C57BL/6J
transcript	ENSMUST00000078766	Ensembl | MGI Sequence Detail	467	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rps27a-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86350	Chr9:83291672-83291674 (+)	-40 bp