Gm9174 Pseudogene Detail

Summary

• Symbol
  Gm9174
• Name
  predicted pseudogene 9174

• Feature Type
  pseudogene
• IDs
  MGI:3643688
  NCBI Gene: 668450
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:70597636-70597890 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 36.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  7

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643688	pseudogene	Chr14:70597468-70598349 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012767	pseudogene	Chr4:93831108-93831365 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012345	pseudogene	Chr4:91418437-91418694 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0012704	pseudogene	Chr4:94147860-94148117 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0012168	pseudogene	Chr4:88495928-88496304 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011977	pseudogene	Chr4:90383148-90383401 (+)
WSB/EiJ	MGP_WSBEiJ_G0012372	pseudogene	Chr4:93138113-93138370 (+)

Homology

• Gene Tree
  Gm9174
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm9174
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  1

• Ensembl
  ENSMUSG00000058745 (Evidence)
• NCBI Gene
  668450

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000058745	Ensembl Gene Model | MGI Sequence Detail	255	C57BL/6J
transcript	ENSMUST00000078149	Ensembl | MGI Sequence Detail	255	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Gm9174:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr126411	Chr14:70597437-70597473 (+)	-181 bp