Gm8054 Pseudogene Detail

Summary

• Symbol
  Gm8054
• Name
  predicted pseudogene 8054

• Feature Type
  pseudogene
• IDs
  MGI:3643693
  NCBI Gene: 666340
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:79596031-79596498 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 37.26 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643693	pseudogene	Chr8:79596015-79596498 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014084	pseudogene	Chr8:79515608-79517341 (-)
A/J	MGP_AJ_G0014104	pseudogene	Chr8:76336694-76337168 (-)
AKR/J	MGP_AKRJ_G0014032	pseudogene	Chr8:78636662-78637167 (-)
BALB/cJ	MGP_BALBcJ_G0014058	pseudogene	Chr8:76447367-76449347 (-)
C3H/HeJ	MGP_C3HHeJ_G0013888	pseudogene	Chr8:79255335-79256366 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014497	pseudogene	Chr8:82565184-82566781 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013548	pseudogene	Chr8:78593172-78593638 (-)
CBA/J	MGP_CBAJ_G0013870	pseudogene	Chr8:85486860-85493218 (-)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0013950	pseudogene	Chr8:75026688-75027142 (-)
LP/J	MGP_LPJ_G0014035	pseudogene	Chr8:79603451-79603908 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013977	pseudogene	Chr8:88060172-88061677 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014470	pseudogene	Chr8:78652690-78653149 (-)
PWK/PhJ	MGP_PWKPhJ_G0013357	pseudogene	Chr8:75309065-75309639 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013139	pseudogene	Chr8:77463888-77464544 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm8054
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm8054
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000069986 (Evidence)
• NCBI Gene
  666340

Representative Sequences			Length	Strain/Species
genomic	666340	NCBI Gene Model | MGI Sequence Detail	468	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;