Gm5989 Pseudogene Detail

Summary

• Symbol
  Gm5989
• Name
  predicted pseudogene 5989

• Feature Type
  pseudogene
• IDs
  MGI:3643846
  NCBI Gene: 546894
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:23157988-23160060 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 10.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643846	pseudogene	Chr6:23157984-23160060 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	MGP_AKRJ_G0013334	pseudogene	Chr6:20490377-20492485 (-)
BALB/cJ	MGP_BALBcJ_G0013419	pseudogene	Chr6:47748655-47779647 (+)
C3H/HeJ	MGP_C3HHeJ_G0013269	pseudogene	Chr6:49112579-49114568 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013727	pseudogene	Chr6:21325621-21327678 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0013799	pseudogene	Chr6:48996494-48999714 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5989
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  1

• Ensembl
  ENSMUSG00000106989 (Evidence)
• NCBI Gene
  546894

Representative Sequences			Length	Strain/Species
genomic	546894	NCBI Gene Model | MGI Sequence Detail	2073	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;