Gm6272 Pseudogene Detail

Summary

• Symbol
  Gm6272
• Name
  predicted pseudogene 6272

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3643871
  NCBI Gene: 108169117
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:144660437-144660607 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 84.75 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643871	pseudogene	Chr5:144660393-144660638 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013309	pseudogene	Chr5:150110958-150111128 (-)
A/J	MGP_AJ_G0013289	pseudogene	Chr5:143645533-143645703 (-)
AKR/J	MGP_AKRJ_G0013253	pseudogene	Chr5:148120957-148121127 (-)
BALB/cJ	MGP_BALBcJ_G0013267	pseudogene	Chr5:144920849-144921019 (-)
C3H/HeJ	MGP_C3HHeJ_G0013116	pseudogene	Chr5:148954594-148954764 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013636	pseudogene	Chr5:155577884-155578054 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011780	pseudogene	Chr5:137416622-137416792 (-)
CAST/EiJ	MGP_CASTEiJ_G0012837	pseudogene	Chr5:148514379-148514549 (-)
CBA/J	MGP_CBAJ_G0013084	pseudogene	Chr5:161987620-161987790 (-)
DBA/2J	MGP_DBA2J_G0013168	pseudogene	Chr5:143385993-143386163 (-)
FVB/NJ	MGP_FVBNJ_G0013166	pseudogene	Chr5:142606815-142606985 (-)
LP/J	MGP_LPJ_G0013235	pseudogene	Chr5:150689076-150689246 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013185	pseudogene	Chr5:164325501-164325671 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013639	pseudogene	Chr5:148032811-148032981 (-)
PWK/PhJ	MGP_PWKPhJ_G0012652	pseudogene	Chr5:142522729-142522899 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012440	pseudogene	Chr5:145765947-145766107 (-)
WSB/EiJ	MGP_WSBEiJ_G0012877	pseudogene	Chr5:148824380-148824550 (-)

Homology

• Gene Tree
  Gm6272
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000082524 (Evidence)
• NCBI Gene
  108169117

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082524	Ensembl Gene Model | MGI Sequence Detail	171	C57BL/6J
transcript	ENSMUST00000121256	Ensembl | MGI Sequence Detail	171	Not Applicable
polypeptide	XP_036021558	RefSeq | MGI Sequence Detail	61	C57BL/6J

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;